Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | N7K39_RS04140 | Genome accession | NZ_CP104764 |
| Coordinates | 833360..833629 (+) | Length | 89 a.a. |
| NCBI ID | WP_010746556.1 | Uniprot ID | A0AAW8TC89 |
| Organism | Enterococcus raffinosus strain Er676 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 828360..838629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7K39_RS04115 (N7K39_04115) | dat | 828694..829563 (+) | 870 | WP_010746561.1 | D-amino-acid transaminase | - |
| N7K39_RS04120 (N7K39_04120) | - | 829653..830435 (+) | 783 | WP_010746560.1 | phosphotransferase family protein | - |
| N7K39_RS04125 (N7K39_04125) | trmB | 830695..831345 (+) | 651 | WP_010746559.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| N7K39_RS04130 (N7K39_04130) | comGA | 831439..832371 (+) | 933 | WP_028021113.1 | competence type IV pilus ATPase ComGA | - |
| N7K39_RS04135 (N7K39_04135) | comGB | 832350..833363 (+) | 1014 | WP_028021114.1 | competence type IV pilus assembly protein ComGB | - |
| N7K39_RS04140 (N7K39_04140) | comYC | 833360..833629 (+) | 270 | WP_010746556.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| N7K39_RS04145 (N7K39_04145) | comGD | 833601..834068 (+) | 468 | WP_010746555.1 | competence type IV pilus minor pilin ComGD | - |
| N7K39_RS04150 (N7K39_04150) | comGE | 834046..834327 (+) | 282 | WP_231371722.1 | competence type IV pilus minor pilin ComGE | - |
| N7K39_RS04155 (N7K39_04155) | comGF | 834314..834736 (+) | 423 | WP_010746553.1 | competence type IV pilus minor pilin ComGF | - |
| N7K39_RS04160 (N7K39_04160) | comGG | 834729..835049 (+) | 321 | WP_010746552.1 | competence type IV pilus minor pilin ComGG | - |
| N7K39_RS04165 (N7K39_04165) | - | 835216..836223 (+) | 1008 | WP_010746551.1 | class I SAM-dependent methyltransferase | - |
| N7K39_RS04170 (N7K39_04170) | - | 836272..837468 (+) | 1197 | WP_010746550.1 | acetate kinase | - |
| N7K39_RS04175 (N7K39_04175) | - | 837613..837963 (+) | 351 | WP_010746549.1 | BMC domain-containing protein | - |
| N7K39_RS04180 (N7K39_04180) | - | 837967..838407 (+) | 441 | WP_010746548.1 | EutP/PduV family microcompartment system protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10213.99 Da Isoelectric Point: 8.4367
>NTDB_id=732147 N7K39_RS04140 WP_010746556.1 833360..833629(+) (comYC) [Enterococcus raffinosus strain Er676]
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
Nucleotide
Download Length: 270 bp
>NTDB_id=732147 N7K39_RS04140 WP_010746556.1 833360..833629(+) (comYC) [Enterococcus raffinosus strain Er676]
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTATTGTTGCTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTATTGTTGCTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
56.471 |
95.506 |
0.539 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
49.412 |
95.506 |
0.472 |
| comGC/cglC | Streptococcus mitis SK321 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus pneumoniae R6 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae D39 |
47.619 |
94.382 |
0.449 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
43.82 |
100 |
0.438 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
44.706 |
95.506 |
0.427 |
| comYC | Streptococcus mutans UA140 |
45.679 |
91.011 |
0.416 |
| comYC | Streptococcus mutans UA159 |
45.679 |
91.011 |
0.416 |
| comGC | Staphylococcus aureus N315 |
45.57 |
88.764 |
0.404 |
| comGC | Staphylococcus aureus MW2 |
45.57 |
88.764 |
0.404 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
47.222 |
80.899 |
0.382 |