Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | N7K38_RS04455 | Genome accession | NZ_CP104762 |
| Coordinates | 873796..874065 (+) | Length | 89 a.a. |
| NCBI ID | WP_010746556.1 | Uniprot ID | A0AAW8TC89 |
| Organism | Enterococcus raffinosus strain ATCC 49464 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 868796..879065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N7K38_RS04430 (N7K38_04430) | dat | 869130..869999 (+) | 870 | WP_010746561.1 | D-amino-acid transaminase | - |
| N7K38_RS04435 (N7K38_04435) | - | 870089..870871 (+) | 783 | WP_010746560.1 | phosphotransferase family protein | - |
| N7K38_RS04440 (N7K38_04440) | trmB | 871131..871781 (+) | 651 | WP_010746559.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| N7K38_RS04445 (N7K38_04445) | comGA | 871875..872807 (+) | 933 | WP_028021113.1 | competence type IV pilus ATPase ComGA | - |
| N7K38_RS04450 (N7K38_04450) | comGB | 872786..873799 (+) | 1014 | WP_028021114.1 | competence type IV pilus assembly protein ComGB | - |
| N7K38_RS04455 (N7K38_04455) | comYC | 873796..874065 (+) | 270 | WP_010746556.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| N7K38_RS04460 (N7K38_04460) | comGD | 874037..874504 (+) | 468 | WP_010746555.1 | competence type IV pilus minor pilin ComGD | - |
| N7K38_RS04465 (N7K38_04465) | comGE | 874482..874763 (+) | 282 | WP_231371722.1 | competence type IV pilus minor pilin ComGE | - |
| N7K38_RS04470 (N7K38_04470) | comGF | 874750..875172 (+) | 423 | WP_010746553.1 | competence type IV pilus minor pilin ComGF | - |
| N7K38_RS04475 (N7K38_04475) | comGG | 875165..875485 (+) | 321 | WP_010746552.1 | competence type IV pilus minor pilin ComGG | - |
| N7K38_RS04480 (N7K38_04480) | - | 875652..876659 (+) | 1008 | WP_010746551.1 | class I SAM-dependent methyltransferase | - |
| N7K38_RS04485 (N7K38_04485) | - | 876708..877904 (+) | 1197 | WP_010746550.1 | acetate kinase | - |
| N7K38_RS04490 (N7K38_04490) | - | 878049..878399 (+) | 351 | WP_010746549.1 | BMC domain-containing protein | - |
| N7K38_RS04495 (N7K38_04495) | - | 878403..878843 (+) | 441 | WP_010746548.1 | EutP/PduV family microcompartment system protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10213.99 Da Isoelectric Point: 8.4367
>NTDB_id=732101 N7K38_RS04455 WP_010746556.1 873796..874065(+) (comYC) [Enterococcus raffinosus strain ATCC 49464]
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
Nucleotide
Download Length: 270 bp
>NTDB_id=732101 N7K38_RS04455 WP_010746556.1 873796..874065(+) (comYC) [Enterococcus raffinosus strain ATCC 49464]
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTATTGTTGCTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTATTGTTGCTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
56.471 |
95.506 |
0.539 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
49.412 |
95.506 |
0.472 |
| comGC/cglC | Streptococcus mitis SK321 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus pneumoniae R6 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae D39 |
47.619 |
94.382 |
0.449 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
43.82 |
100 |
0.438 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
44.706 |
95.506 |
0.427 |
| comYC | Streptococcus mutans UA140 |
45.679 |
91.011 |
0.416 |
| comYC | Streptococcus mutans UA159 |
45.679 |
91.011 |
0.416 |
| comGC | Staphylococcus aureus N315 |
45.57 |
88.764 |
0.404 |
| comGC | Staphylococcus aureus MW2 |
45.57 |
88.764 |
0.404 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
47.222 |
80.899 |
0.382 |