Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   N5980_RS01950 Genome accession   NZ_CP104651
Coordinates   418793..419242 (+) Length   149 a.a.
NCBI ID   WP_261635301.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413793..424242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS01930 (N5980_01930) - 414746..416167 (+) 1422 WP_261635299.1 FAD-dependent oxidoreductase -
  N5980_RS01935 (N5980_01935) - 416353..416946 (+) 594 WP_414632202.1 LemA family protein -
  N5980_RS01940 (N5980_01940) - 416983..418026 (+) 1044 WP_414632203.1 TPM domain-containing protein -
  N5980_RS01945 (N5980_01945) - 418020..418580 (+) 561 WP_261635300.1 TPM domain-containing protein -
  N5980_RS01950 (N5980_01950) comP 418793..419242 (+) 450 WP_261635301.1 pilin Machinery gene
  N5980_RS01955 (N5980_01955) - 419242..420510 (+) 1269 WP_261635302.1 O-antigen ligase family protein -
  N5980_RS01960 (N5980_01960) tfpZ 420535..421269 (+) 735 Protein_375 TfpX/TfpZ family type IV pilin accessory protein -
  N5980_RS01965 (N5980_01965) - 421422..423059 (+) 1638 WP_261635303.1 PglL family O-oligosaccharyltransferase -
  N5980_RS01970 (N5980_01970) bfr 423115..423579 (-) 465 WP_261635304.1 heteropolymeric bacterioferritin subunit Bfr -
  N5980_RS01975 (N5980_01975) - 423806..424000 (-) 195 WP_004787097.1 bacterioferritin-associated ferredoxin -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 14969.15 Da        Isoelectric Point: 8.1003

>NTDB_id=731240 N5980_RS01950 WP_261635301.1 418793..419242(+) (comP) [Acinetobacter variabilis strain 2021CK-01005]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTVRARVSEGITTASAMKATVSENILNAGALVTGTPSTAGSACVGVTE
ISSGTGNVASATCGASKPGQIIVTMNATTGKGVPVYLTPSYSASAVSWSCSTTAGNEKYVPSECRKVGT

Nucleotide


Download         Length: 450 bp        

>NTDB_id=731240 N5980_RS01950 WP_261635301.1 418793..419242(+) (comP) [Acinetobacter variabilis strain 2021CK-01005]
ATGAACGCTCAAAAAGGTTTTACCCTTATCGAATTAATGATCGTTGTAGCGATCATTGGTATTTTGGCTGCAATTGCGAT
TCCTGCTTATCAAGACTACACCGTTCGTGCACGTGTTTCTGAAGGTATTACAACCGCTTCTGCTATGAAAGCTACTGTAT
CAGAAAATATTTTAAATGCAGGGGCTTTGGTAACAGGTACACCTAGTACAGCTGGTTCTGCATGCGTTGGCGTTACTGAG
ATTTCTAGTGGTACAGGTAATGTAGCTTCTGCAACTTGTGGAGCTAGTAAGCCAGGACAAATCATTGTAACAATGAATGC
TACAACAGGAAAGGGTGTTCCTGTATATTTGACACCATCATATAGTGCTTCTGCAGTTAGTTGGTCTTGTTCGACTACAG
CAGGTAATGAAAAATATGTGCCTTCAGAGTGTCGTAAAGTTGGAACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-145)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

75.51

98.658

0.745
  pilA2 Legionella pneumophila str. Paris

51.049

95.973

0.49
  pilA Ralstonia pseudosolanacearum GMI1000

43.195

100

0.49
  pilA2 Legionella pneumophila strain ERS1305867

50.35

95.973

0.483
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.097

100

0.463
  pilE Neisseria gonorrhoeae MS11

37.952

100

0.423
  pilE Neisseria gonorrhoeae strain FA1090

36.364

100

0.403
  pilA Vibrio campbellii strain DS40M4

42.647

91.275

0.389
  pilA Pseudomonas aeruginosa PAK

37.255

100

0.383
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.437

95.302

0.376
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.762

100

0.362