Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A6P39_RS15250 Genome accession   NZ_CP119133
Coordinates   3481118..3481768 (+) Length   216 a.a.
NCBI ID   WP_067054209.1    Uniprot ID   -
Organism   Streptomyces sp. FXJ1.172     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3476118..3486768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P39_RS15220 (A6P39_015230) - 3476288..3476497 (-) 210 WP_067054197.1 hypothetical protein -
  A6P39_RS15225 (A6P39_015235) - 3476497..3476922 (-) 426 WP_067054199.1 hypothetical protein -
  A6P39_RS15230 (A6P39_015240) - 3476978..3478447 (-) 1470 WP_067054201.1 HAMP domain-containing sensor histidine kinase -
  A6P39_RS15235 (A6P39_015245) - 3478444..3479193 (-) 750 WP_067054203.1 response regulator transcription factor -
  A6P39_RS15240 (A6P39_015250) - 3479203..3479784 (-) 582 WP_067054205.1 hypothetical protein -
  A6P39_RS15245 (A6P39_015255) - 3479937..3481121 (+) 1185 WP_067054207.1 histidine kinase -
  A6P39_RS15250 (A6P39_015260) vraR 3481118..3481768 (+) 651 WP_067054209.1 response regulator transcription factor Regulator
  A6P39_RS15255 (A6P39_015265) - 3481897..3483717 (+) 1821 WP_067054211.1 glycoside hydrolase family 18 chitinase -
  A6P39_RS15260 (A6P39_015270) - 3483796..3484242 (-) 447 WP_067054213.1 DUF2550 domain-containing protein -
  A6P39_RS15265 (A6P39_015275) - 3484402..3484776 (-) 375 WP_067054215.1 F0F1 ATP synthase subunit epsilon -
  A6P39_RS15270 (A6P39_015280) atpD 3484887..3486323 (-) 1437 WP_067054216.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22923.65 Da        Isoelectric Point: 6.7328

>NTDB_id=725048 A6P39_RS15250 WP_067054209.1 3481118..3481768(+) (vraR) [Streptomyces sp. FXJ1.172]
MTPAIRVLVAEDQSAVRAGLVLILRSAPDIEVAGEAADGEQAVELARELRPDLVLMDVQMPRLDGVSATRRIVAEGLADV
LVLTTFDLDAYVFGALRAGAAGFLLKHTEARDLLAAVRTVARGEGIVAPAVTRRLIAEFAAVPARGTRADPAVLEGLTRR
EREVLSCIGEGLSNAGIAKRLHMAEGTVKTHVSRLLAKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=725048 A6P39_RS15250 WP_067054209.1 3481118..3481768(+) (vraR) [Streptomyces sp. FXJ1.172]
ATGACCCCCGCCATCCGGGTCCTCGTCGCCGAGGACCAGTCCGCCGTCCGCGCCGGGCTCGTGCTGATCCTGCGCAGCGC
CCCCGACATCGAGGTGGCCGGGGAGGCGGCGGACGGCGAGCAGGCGGTCGAGCTGGCCCGGGAACTGCGGCCGGATCTCG
TCCTGATGGACGTGCAGATGCCGCGCCTGGACGGGGTGTCGGCGACCCGGCGGATCGTCGCGGAGGGGCTCGCGGACGTG
CTCGTGCTGACCACCTTCGACCTGGACGCGTATGTGTTCGGGGCGCTCCGGGCGGGAGCGGCCGGGTTCCTGCTGAAGCA
CACCGAGGCACGCGATCTGCTGGCGGCGGTGCGGACGGTGGCGCGCGGGGAGGGGATCGTCGCCCCGGCGGTGACCCGGC
GGCTGATCGCCGAGTTCGCCGCGGTGCCGGCGCGCGGGACGAGGGCCGATCCAGCGGTGCTGGAGGGGCTGACCCGGCGG
GAGCGCGAGGTGCTGTCCTGCATCGGCGAGGGCCTGTCGAACGCCGGGATCGCAAAGCGGCTGCACATGGCCGAGGGCAC
GGTGAAGACGCACGTCAGCCGGCTGCTGGCCAAGCTGGAGCTGCGCAGCCGGGTCCAAGCGGCCGTGCTGGCCCAGGAGT
TGGGGATCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-211)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.857

97.222

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.384