Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NXY85_RS16555 Genome accession   NZ_CP103290
Coordinates   3244698..3244988 (-) Length   96 a.a.
NCBI ID   WP_088116342.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3239698..3249988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS16515 darA 3239716..3240045 (+) 330 WP_003328606.1 cyclic di-AMP receptor DarA -
  NXY85_RS16520 - 3240058..3240498 (+) 441 WP_003328605.1 YaaR family protein -
  NXY85_RS16525 holB 3240510..3241499 (+) 990 WP_010787388.1 DNA polymerase III subunit delta' -
  NXY85_RS16530 ricT 3241502..3242329 (+) 828 WP_258728479.1 competence/sporulation regulator complex protein RicT -
  NXY85_RS16535 yabA 3242344..3242703 (+) 360 WP_003328601.1 replication initiation-control protein YabA -
  NXY85_RS16540 - 3242764..3243507 (+) 744 WP_003328600.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NXY85_RS16545 - 3243494..3243793 (+) 300 WP_003328599.1 GIY-YIG nuclease family protein -
  NXY85_RS16550 rsmI 3243768..3244646 (+) 879 WP_258728480.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NXY85_RS16555 abrB 3244698..3244988 (-) 291 WP_088116342.1 transition state genes transcriptional regulator AbrB Regulator
  NXY85_RS16560 metG 3245475..3247469 (+) 1995 WP_258728481.1 methionine--tRNA ligase -
  NXY85_RS16565 - 3247548..3248315 (+) 768 WP_010787391.1 TatD family hydrolase -
  NXY85_RS16570 - 3248473..3249798 (+) 1326 WP_258728482.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10858.67 Da        Isoelectric Point: 6.3482

>NTDB_id=721693 NXY85_RS16555 WP_088116342.1 3244698..3244988(-) (abrB) [Bacillus atrophaeus strain NS2]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=721693 NXY85_RS16555 WP_088116342.1 3244698..3244988(-) (abrB) [Bacillus atrophaeus strain NS2]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

100

0.948