Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NXY85_RS18225 Genome accession   NZ_CP103290
Coordinates   3575852..3576250 (-) Length   132 a.a.
NCBI ID   WP_258728587.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3570852..3581250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS18200 - 3571358..3572494 (+) 1137 WP_258728583.1 zinc-dependent alcohol dehydrogenase -
  NXY85_RS18205 - 3572507..3572962 (+) 456 WP_258728584.1 RDD family protein -
  NXY85_RS18210 - 3573048..3573377 (+) 330 WP_258728585.1 YckD family protein -
  NXY85_RS18215 - 3573581..3574309 (+) 729 WP_063638715.1 AAA family ATPase -
  NXY85_RS18220 - 3574379..3575815 (+) 1437 WP_258728586.1 glycoside hydrolase family 1 protein -
  NXY85_RS18225 nin/comJ 3575852..3576250 (-) 399 WP_258728587.1 competence protein ComJ Regulator
  NXY85_RS18230 nucA/comI 3576269..3576706 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NXY85_RS18235 - 3576928..3578130 (-) 1203 WP_374115547.1 methyl-accepting chemotaxis protein -
  NXY85_RS21640 - 3578137..3578631 (-) 495 Protein_3579 cache domain-containing protein -
  NXY85_RS18240 hxlB 3578759..3579316 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  NXY85_RS18245 hxlA 3579323..3579955 (-) 633 WP_258728589.1 3-hexulose-6-phosphate synthase -
  NXY85_RS18250 - 3580174..3580539 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14798.69 Da        Isoelectric Point: 5.1406

>NTDB_id=721697 NXY85_RS18225 WP_258728587.1 3575852..3576250(-) (nin/comJ) [Bacillus atrophaeus strain NS2]
MTNSWKPQGLFISYHQFTIFQKNSKPPIIDWTDEAIEKGYAEADGAVSFEAQRNSKVFIVLRLNSSDIVESYEKKAIVPF
HVSGDGINIESVMSKRLSFNLPKGQYVFTCYTVPAEASDLHADTYIIDAAAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=721697 NXY85_RS18225 WP_258728587.1 3575852..3576250(-) (nin/comJ) [Bacillus atrophaeus strain NS2]
TTGACAAATTCATGGAAACCGCAAGGGCTCTTTATCTCATATCATCAATTTACCATTTTTCAAAAGAATTCAAAGCCGCC
TATAATAGATTGGACGGATGAAGCAATTGAAAAAGGATATGCAGAGGCGGACGGAGCCGTTTCATTCGAAGCGCAGAGAA
ACTCCAAAGTTTTTATTGTCTTGCGTCTCAACAGCTCAGACATAGTTGAATCCTATGAAAAAAAAGCAATTGTTCCTTTT
CATGTCTCAGGGGACGGGATAAATATAGAAAGTGTCATGTCAAAAAGGCTGTCATTTAATTTGCCGAAAGGTCAATACGT
CTTCACTTGCTATACCGTTCCCGCTGAAGCTTCAGACCTGCATGCAGATACATATATTATTGACGCTGCTGCACAATAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(10-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

74.809

99.242

0.742