Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NXY85_RS18230 Genome accession   NZ_CP103290
Coordinates   3576269..3576706 (-) Length   145 a.a.
NCBI ID   WP_088116478.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3571269..3581706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS18200 - 3571358..3572494 (+) 1137 WP_258728583.1 zinc-dependent alcohol dehydrogenase -
  NXY85_RS18205 - 3572507..3572962 (+) 456 WP_258728584.1 RDD family protein -
  NXY85_RS18210 - 3573048..3573377 (+) 330 WP_258728585.1 YckD family protein -
  NXY85_RS18215 - 3573581..3574309 (+) 729 WP_063638715.1 AAA family ATPase -
  NXY85_RS18220 - 3574379..3575815 (+) 1437 WP_258728586.1 glycoside hydrolase family 1 protein -
  NXY85_RS18225 nin/comJ 3575852..3576250 (-) 399 WP_258728587.1 competence protein ComJ Regulator
  NXY85_RS18230 nucA/comI 3576269..3576706 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NXY85_RS18235 - 3576928..3578130 (-) 1203 WP_374115547.1 methyl-accepting chemotaxis protein -
  NXY85_RS21640 - 3578137..3578631 (-) 495 Protein_3579 cache domain-containing protein -
  NXY85_RS18240 hxlB 3578759..3579316 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  NXY85_RS18245 hxlA 3579323..3579955 (-) 633 WP_258728589.1 3-hexulose-6-phosphate synthase -
  NXY85_RS18250 - 3580174..3580539 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16005.77 Da        Isoelectric Point: 4.1626

>NTDB_id=721698 NXY85_RS18230 WP_088116478.1 3576269..3576706(-) (nucA/comI) [Bacillus atrophaeus strain NS2]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=721698 NXY85_RS18230 WP_088116478.1 3576269..3576706(-) (nucA/comI) [Bacillus atrophaeus strain NS2]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

82.639

99.31

0.821