Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NXY85_RS16890 Genome accession   NZ_CP103290
Coordinates   3306165..3307544 (+) Length   459 a.a.
NCBI ID   WP_035174932.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3301165..3312544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS16870 ctsR 3301519..3301983 (+) 465 WP_003328320.1 transcriptional regulator CtsR -
  NXY85_RS16875 - 3301997..3302554 (+) 558 WP_003328319.1 UvrB/UvrC motif-containing protein -
  NXY85_RS16880 - 3302554..3303645 (+) 1092 WP_010787416.1 protein arginine kinase -
  NXY85_RS16885 clpC 3303642..3306080 (+) 2439 WP_003328317.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  NXY85_RS16890 radA 3306165..3307544 (+) 1380 WP_035174932.1 DNA repair protein RadA Machinery gene
  NXY85_RS16895 disA 3307548..3308630 (+) 1083 WP_010787418.1 DNA integrity scanning diadenylate cyclase DisA -
  NXY85_RS16900 - 3308751..3309851 (+) 1101 WP_003328314.1 PIN/TRAM domain-containing protein -
  NXY85_RS16905 ispD 3309865..3310563 (+) 699 WP_258728494.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NXY85_RS16910 ispF 3310556..3311032 (+) 477 WP_258729879.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49561.99 Da        Isoelectric Point: 8.2443

>NTDB_id=721695 NXY85_RS16890 WP_035174932.1 3306165..3307544(+) (radA) [Bacillus atrophaeus strain NS2]
MAKSKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPITSIETSEEPRIKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSTHSVLYISGEESVKQTKLRADRLGINNQTLHVLSETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCIIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=721695 NXY85_RS16890 WP_035174932.1 3306165..3307544(+) (radA) [Bacillus atrophaeus strain NS2]
ATGGCTAAATCAAAAACGAAATTTATCTGCCAATCCTGCGGCTATGAATCCGCAAAGTGGATGGGGAAATGTCCAGGCTG
CGGAGCTTGGAACACAATGACAGAAGAAACAGTAAAAAAAACACCGGCTAATCGCAGAGCAGCTTTTGCACACTCTACCC
AAACCGTAAAGAAACCTTCACCTATCACATCAATAGAAACATCTGAAGAACCCCGAATTAAAACACAGCTTGGAGAATTT
AACAGAGTGCTGGGCGGCGGTGTTGTGAAGGGCTCACTTGTCTTAATTGGAGGAGATCCCGGTATTGGTAAGTCAACCTT
GCTGCTTCAGGTATCCGCTCAGTTATCAGACTCCACGCATAGTGTGCTCTACATTTCAGGCGAGGAATCTGTGAAACAAA
CGAAACTCAGAGCAGATCGGCTCGGTATTAATAACCAAACGTTACATGTTTTATCTGAAACCGACATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCATTTGTGGTTGTTGACTCCATTCAGACAGTCTATCAAAGCGATATTACCTCAGC
TCCGGGCAGTGTGTCGCAAGTCAGAGAGTGTACGGCAGAGCTGATGAGAATTGCCAAGACAAAGGGTATACCGATTTTTA
TCGTAGGACATGTAACAAAAGAAGGTTCAATTGCTGGTCCGAGACTGTTGGAACATATGGTTGATACTGTTCTTTACTTT
GAAGGAGAGCGGCATCATACGTTCCGCATCCTGCGGGCAGTAAAAAACCGTTTCGGCTCTACAAATGAAATGGGCATTTT
CGAAATGCGGGAAGAGGGTCTGACAGAGGTGCTGAATCCTTCTGAAATCTTTCTTGAGGAACGATCAGCCGGAGCGGCAG
GTTCCAGCATAGTAGCGTCTATGGAAGGCACCAGACCGATTCTCGTGGAAATACAGGCACTTATCTCACCGACCAGCTTT
GGAAATCCCCGGCGTATGGCCACGGGAATTGACCATAACAGAGTATCACTGCTGATGGCTGTGTTAGAAAAAAGAGTCGG
ACTGCTGCTTCAAAATCAAGATGCGTATTTAAAGGTAGCAGGCGGCGTTAAGCTGGATGAACCGGCAATCGATCTCGCTG
TAGCTGTCAGTATTGCATCAAGCTTTAGAGATACACCGCCAAATCCTGCCGACTGCATTATAGGAGAAGTCGGTTTAACA
GGTGAGGTCCGCAGGGTATCCAGAATTGAACAGCGTGTGAAAGAAGCTGCTAAACTTGGATTTAAGCGTATGATCATACC
TGCGGCGAATTTAGATGGATGGACAAAACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

94.541

99.782

0.943
  radA Streptococcus mitis NCTC 12261

63.355

98.693

0.625
  radA Streptococcus pneumoniae Rx1

63.355

98.693

0.625
  radA Streptococcus pneumoniae D39

63.355

98.693

0.625
  radA Streptococcus pneumoniae R6

63.355

98.693

0.625
  radA Streptococcus pneumoniae TIGR4

63.355

98.693

0.625
  radA Streptococcus mitis SK321

63.135

98.693

0.623