Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NW905_RS24055 Genome accession   NZ_CP103054
Coordinates   5311263..5312468 (-) Length   401 a.a.
NCBI ID   WP_258802158.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain P33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5306263..5317468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW905_RS24040 (NW905_24040) - 5307912..5309531 (-) 1620 WP_096049176.1 AAA family ATPase -
  NW905_RS24045 (NW905_24045) aroB 5309547..5310644 (-) 1098 WP_258800570.1 3-dehydroquinate synthase -
  NW905_RS24050 (NW905_24050) aroK 5310740..5311258 (-) 519 WP_028689109.1 shikimate kinase AroK -
  NW905_RS24055 (NW905_24055) pilQ 5311263..5312468 (-) 1206 WP_258802158.1 type IV pilus secretin PilQ Machinery gene
  NW905_RS24060 (NW905_24060) - 5312425..5313438 (-) 1014 WP_258800571.1 pilus assembly protein PilP -
  NW905_RS24065 (NW905_24065) - 5313435..5313953 (-) 519 WP_258802159.1 PilN domain-containing protein -
  NW905_RS24070 (NW905_24070) pilM 5313971..5314867 (-) 897 WP_258800572.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 43350.85 Da        Isoelectric Point: 4.9006

>NTDB_id=721203 NW905_RS24055 WP_258802158.1 5311263..5312468(-) (pilQ) [Pseudomonas mosselii strain P33]
MLGLQMTQAETFQGEPMSLNLQDVELRSVLQVMADHAGVNLVVGDSVQGRITLRLEDVPWEQALDLVLRSKGLGRRQEGN
VLLVAPVAELAGQVQGIEPLQRELIPVFHAKAGELAELLLASLADDGAVAGRGSLSVDARTNTLVATQPAVRLAELRRLV
TQLDVPVRQVMIEARIVEANVDYEKALGVRWGGPLYGSAPRLGSDLFVDLGVERGGAALGVGLLRSDILLDLELSAMEKS
GNGEIISQPKVVTADKETARILKGTEVPYQETTRSGATSVSFREASLSLEVTPQITPDGKVIMAVRVTKDEPDFINALND
VPPIRKNEVNAKVRVTDGQTIVIGGVYSTSQNKVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMGDQAIAVS
R

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=721203 NW905_RS24055 WP_258802158.1 5311263..5312468(-) (pilQ) [Pseudomonas mosselii strain P33]
ATGCTGGGGCTTCAGATGACGCAGGCCGAGACGTTTCAGGGTGAGCCGATGTCGCTCAACCTCCAGGACGTCGAGCTGCG
TTCGGTGCTTCAGGTCATGGCCGATCACGCGGGTGTCAACCTGGTGGTCGGCGACTCGGTGCAGGGGCGGATTACCCTGC
GCCTGGAGGACGTGCCCTGGGAGCAGGCGCTTGATCTGGTGCTGCGCAGCAAGGGCCTGGGCAGGCGCCAGGAGGGGAAT
GTGCTGCTGGTTGCTCCTGTGGCAGAGCTCGCTGGGCAGGTCCAGGGCATCGAGCCACTGCAGCGTGAATTGATCCCTGT
CTTCCATGCCAAGGCCGGCGAGCTGGCGGAGCTGCTGCTGGCGAGCCTGGCGGACGACGGTGCCGTGGCCGGGCGTGGCA
GCCTCAGTGTGGATGCTCGCACCAATACCCTGGTAGCCACCCAGCCTGCCGTGCGGCTCGCCGAACTGCGCAGGCTGGTC
ACGCAGCTGGATGTGCCGGTGCGCCAGGTCATGATCGAGGCACGGATCGTCGAGGCCAATGTCGACTACGAAAAGGCACT
GGGCGTGCGCTGGGGTGGACCGCTGTATGGCTCGGCCCCCCGGCTGGGCAGCGACCTTTTCGTCGATCTTGGCGTCGAGC
GGGGAGGTGCGGCGTTGGGGGTGGGGCTGCTGCGCAGCGATATCCTGCTCGACCTGGAGCTCAGCGCCATGGAAAAAAGC
GGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTTACGGCCGACAAGGAAACCGCGCGCATACTCAAGGGTACCGAAGT
GCCCTACCAGGAAACCACCCGCAGTGGCGCCACTTCGGTCTCCTTCCGCGAGGCGTCCCTGTCGCTGGAAGTGACGCCGC
AGATCACGCCGGACGGCAAGGTGATCATGGCGGTGCGGGTGACCAAGGACGAGCCGGACTTCATCAATGCCCTCAACGAT
GTGCCGCCGATCCGCAAGAACGAGGTCAACGCCAAGGTGCGGGTGACCGATGGGCAGACCATTGTGATTGGCGGCGTGTA
CTCGACGTCGCAGAACAAAGTGGTCGACAAGGTGCCATTTTTTGGTGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCG
ATGCATTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGGGTGACCAGGCGATTGCTGTGAGT
CGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(104-169)

Secretin and TonB N terminus short domain (STN)

(39-86)

Bacterial type II and III secretion system protein (Secretin)

(236-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

57.339

100

0.623
  comQ Acinetobacter baylyi ADP1

42.163

100

0.476
  pilQ Acinetobacter baumannii strain A118

40.302

100

0.466
  pilQ Acinetobacter baumannii D1279779

40.302

100

0.466
  pilQ Legionella pneumophila strain ERS1305867

42.891

100

0.451
  pilQ Legionella pneumophila strain Lp02

42.891

100

0.451
  pilQ Vibrio campbellii strain DS40M4

39.858

100

0.421
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.385

100

0.419
  pilQ Vibrio cholerae strain A1552

40.385

100

0.419
  pilQ Neisseria meningitidis M1080

35.849

100

0.379
  pilQ Neisseria gonorrhoeae strain FA1090

35.545

100

0.374
  pilQ Neisseria meningitidis MC58

34.988

100

0.369