Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   MGCS35957_RS02710 Genome accession   NZ_CP117288
Coordinates   514607..515356 (+) Length   249 a.a.
NCBI ID   WP_030126108.1    Uniprot ID   A0A223M029
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 509607..520356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS35957_RS02690 (MGCS35957_01102) - 509833..510150 (+) 318 WP_002994587.1 hypothetical protein -
  MGCS35957_RS02695 (MGCS35957_01104) - 510333..511354 (+) 1022 Protein_487 IS3 family transposase -
  MGCS35957_RS02700 (MGCS35957_01106) - 511568..512986 (+) 1419 WP_231873805.1 IS1182 family transposase -
  MGCS35957_RS02710 (MGCS35957_01110) comE/blpR 514607..515356 (+) 750 WP_030126108.1 response regulator transcription factor Regulator
  MGCS35957_RS02720 (MGCS35957_01114) - 515698..516831 (-) 1134 WP_275902597.1 ISAs1-like element IS1548 family transposase -
  MGCS35957_RS02725 (MGCS35957_01116) comD/blpH 517061..518017 (+) 957 WP_046166194.1 GHKL domain-containing protein Regulator
  MGCS35957_RS02730 (MGCS35957_01118) - 518165..518290 (-) 126 WP_011017462.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  MGCS35957_RS02735 (MGCS35957_01122) - 518367..519731 (-) 1365 WP_084916305.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 249 a.a.        Molecular weight: 29141.44 Da        Isoelectric Point: 5.8302

>NTDB_id=717697 MGCS35957_RS02710 WP_030126108.1 514607..515356(+) (comE/blpR) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
MNIFVLEDDFLHQTRIEKIIYKILTDNKLEVNHLEVYGKPNQLLEDISERGRHQLFFLDIDIKGEDKKGMEIAVEIRNKD
PHAVIVFVTTHSEFMPVSFQYQVSALDFIDKELPEELFSHRIEKAITYVQDNQGKTLAEDSFVFTNVKSQIQVSFSDLLY
IETSLIPHKLILYSTKQRVEFYGQLSEIVEQDDRLFQCHRSFVVNPYNISSIDRSERLVYLKGGLSCIVSRLKIRSLIKV
VEELHTKEK

Nucleotide


Download         Length: 750 bp        

>NTDB_id=717697 MGCS35957_RS02710 WP_030126108.1 514607..515356(+) (comE/blpR) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS35957]
ATGAATATTTTTGTCTTAGAGGACGATTTTTTACATCAAACCAGAATTGAAAAAATTATTTATAAGATTTTGACTGATAA
TAAGTTGGAGGTTAACCACTTGGAAGTTTATGGTAAACCCAATCAGCTGCTTGAAGATATATCAGAGAGAGGAAGACATC
AGCTTTTTTTTCTTGACATTGACATTAAGGGAGAAGATAAAAAAGGAATGGAAATTGCTGTGGAGATTAGAAATAAAGAT
CCGCACGCAGTGATAGTTTTTGTGACCACACATTCAGAATTTATGCCGGTATCTTTTCAATACCAGGTTTCAGCTTTAGA
CTTTATTGACAAAGAGTTGCCAGAGGAGTTATTTAGTCATCGCATTGAAAAAGCTATAACTTATGTACAAGATAACCAAG
GAAAAACGTTAGCGGAGGATTCATTTGTTTTTACTAATGTAAAGTCCCAGATACAAGTCTCCTTTTCAGATTTGCTGTAT
ATTGAAACCTCACTAATTCCCCATAAACTCATTCTCTATTCTACTAAACAAAGAGTAGAATTTTATGGTCAATTATCAGA
AATTGTTGAGCAAGATGATCGATTATTTCAATGTCATCGTTCCTTTGTTGTCAATCCCTATAATATATCATCAATAGATA
GATCCGAACGGTTAGTTTATTTAAAGGGGGGATTATCTTGTATTGTTTCGAGATTGAAAATACGATCATTAATAAAAGTA
GTAGAAGAGTTGCACACTAAGGAGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A223M029

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.098

97.992

0.53

  comE/comE2 Streptococcus gordonii strain NCTC7865

40.476

100

0.41

  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

40.476

100

0.41

  comE/comE1 Streptococcus equinus JB1

42.437

95.582

0.406

  comE/comE2 Streptococcus equinus JB1

40.574

97.992

0.398

  comE Streptococcus mitis NCTC 12261

38.4

100

0.386

  comE Streptococcus mitis SK321

38.4

100

0.386

  comE Streptococcus pneumoniae TIGR4

38

100

0.382

  comE Streptococcus pneumoniae Rx1

38

100

0.382

  comE Streptococcus pneumoniae D39

38

100

0.382

  comE Streptococcus pneumoniae R6

38

100

0.382

  comE Streptococcus infantis strain Atu-4

37.903

99.598

0.378