Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NRG74_RS17295 Genome accession   NZ_CP102428
Coordinates   3730082..3731167 (-) Length   361 a.a.
NCBI ID   WP_257704912.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain YY7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3725082..3736167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG74_RS17285 (NRG74_17285) - 3726078..3729461 (+) 3384 WP_257704911.1 PAS domain S-box protein -
  NRG74_RS17290 (NRG74_17290) - 3729463..3730017 (-) 555 WP_017641494.1 L-threonylcarbamoyladenylate synthase -
  NRG74_RS17295 (NRG74_17295) dprA 3730082..3731167 (-) 1086 WP_257704912.1 DNA-processing protein DprA Machinery gene
  NRG74_RS17300 (NRG74_17300) - 3731218..3732249 (-) 1032 WP_026083893.1 LysM peptidoglycan-binding domain-containing protein -
  NRG74_RS17305 (NRG74_17305) def 3732479..3732985 (+) 507 WP_257704913.1 peptide deformylase -
  NRG74_RS17310 (NRG74_17310) fmt 3733044..3733988 (+) 945 WP_257704914.1 methionyl-tRNA formyltransferase -
  NRG74_RS17315 (NRG74_17315) rsmB 3733985..3735286 (+) 1302 WP_257704915.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NRG74_RS17320 (NRG74_17320) - 3735270..3735770 (-) 501 WP_068384394.1 polymer-forming cytoskeletal protein -
  NRG74_RS17325 (NRG74_17325) - 3735787..3736146 (-) 360 WP_257704916.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38112.80 Da        Isoelectric Point: 7.2267

>NTDB_id=716935 NRG74_RS17295 WP_257704912.1 3730082..3731167(-) (dprA) [Pseudomonas oryzihabitans strain YY7]
MASLSPAELDARLRLHALPELGAVRQRLLLDAFGSASAALSAPASAWRALRLPAVAADARRSPATRERVDQALAWLEGPE
RHLLCLGDKRYPALLAEIADPPPLLFVEGRVELLERPQLALVGSRQASAQGLDNARRFAHSLAAAGFCITSGLALGIDGA
AHQGALDAGGGTVAVLGTGLRQLYPRRHLGLARRLLAEGGALVSELPLDCTPQAANFPRRNRIISGLSLGTLVVEASPSS
GSLITARLAAEQGREVFALPGSIHHPGARGCHQLIREGAQLVEGVEHILEALQGWRSLAPVATAAVVEDHPLLQQLAAGP
LNSEELARLCRLSLPEVLVQLTELELEGRVVAQQGSWTRLG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=716935 NRG74_RS17295 WP_257704912.1 3730082..3731167(-) (dprA) [Pseudomonas oryzihabitans strain YY7]
ATGGCCAGCCTCTCCCCTGCCGAGCTGGACGCTCGGCTTCGCCTGCATGCCCTGCCGGAGCTCGGTGCCGTGCGCCAGCG
CCTGCTGCTGGATGCCTTTGGCAGTGCCAGCGCCGCCCTCAGTGCCCCCGCCTCGGCCTGGCGCGCCCTGCGCCTGCCGG
CGGTGGCCGCGGACGCCCGCCGCAGCCCCGCGACTCGCGAACGGGTCGACCAGGCCCTGGCCTGGCTGGAGGGCCCCGAG
CGCCATCTGCTCTGCCTAGGCGACAAGCGCTATCCGGCGCTGCTCGCCGAGATCGCCGATCCACCGCCGCTGCTGTTCGT
CGAAGGACGGGTCGAGTTGCTCGAGCGACCGCAACTGGCCCTGGTCGGCAGCCGCCAGGCCAGTGCCCAGGGACTCGACA
ATGCCCGACGCTTCGCCCACAGCCTGGCCGCGGCCGGTTTCTGCATCACCAGTGGCCTGGCGCTGGGCATCGATGGCGCG
GCGCACCAAGGAGCGCTGGACGCCGGCGGCGGTACGGTGGCCGTGCTGGGCACCGGCCTCCGGCAGCTCTATCCCCGCCG
TCATCTGGGCCTCGCCCGGCGCCTGCTGGCCGAGGGTGGCGCGCTGGTCTCGGAATTGCCGCTGGATTGCACGCCCCAGG
CCGCCAACTTTCCGCGGCGCAACCGGATCATCAGCGGCCTCAGCCTGGGTACCCTGGTGGTGGAGGCCAGCCCCTCCAGC
GGGTCGCTGATCACCGCGCGGCTGGCCGCCGAGCAGGGCCGTGAGGTGTTCGCCCTGCCCGGCTCCATCCATCATCCCGG
GGCGCGAGGCTGTCATCAGCTGATCCGTGAAGGGGCGCAACTGGTGGAGGGCGTGGAGCATATCCTCGAAGCCCTGCAGG
GCTGGCGCAGCCTGGCCCCGGTCGCCACGGCCGCGGTGGTCGAGGATCACCCCCTGCTGCAGCAGCTGGCCGCCGGACCG
CTCAACAGCGAAGAGTTGGCGCGGCTCTGCCGCCTGTCGTTGCCGGAGGTGCTGGTCCAGCTGACCGAGTTGGAGCTGGA
AGGCCGGGTGGTGGCGCAGCAGGGCAGCTGGACGCGTCTCGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (DprA_WH)

(309-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.453

100

0.49
  dprA Vibrio cholerae strain A1552

48.232

86.15

0.416
  dprA Acinetobacter baylyi ADP1

41.076

97.784

0.402
  dprA Neisseria meningitidis MC58

47.458

81.717

0.388
  dprA Neisseria meningitidis strain C311

47.458

81.717

0.388
  dprA Acinetobacter baumannii D1279779

38.398

100

0.385
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.827

99.169

0.385
  dprA Neisseria gonorrhoeae strain FA1090

43.302

88.92

0.385
  dprA Neisseria gonorrhoeae MS11

42.991

88.92

0.382
  dprA Legionella pneumophila strain ERS1305867

46.309

82.548

0.382
  dprA Glaesserella parasuis strain SC1401

47.751

80.055

0.382
  dprA Acinetobacter baumannii strain A118

37.808

100

0.382
  dprA Haemophilus influenzae Rd KW20

47.5

77.562

0.368