Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GB879_RS13100 Genome accession   NZ_CP102352
Coordinates   2543217..2543705 (+) Length   162 a.a.
NCBI ID   WP_154493054.1    Uniprot ID   A0A7X2TGZ6
Organism   Paracoccus sp. SMMA_5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2538217..2548705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GB879_RS13080 (GB879_013085) - 2539965..2540531 (-) 567 WP_263467183.1 hypothetical protein -
  GB879_RS13085 (GB879_013090) hemB 2540697..2541701 (+) 1005 WP_154493048.1 porphobilinogen synthase -
  GB879_RS13090 (GB879_013095) - 2541761..2542333 (+) 573 WP_154493050.1 YSC84-related protein -
  GB879_RS13095 (GB879_013100) - 2542351..2542998 (-) 648 WP_154493052.1 lytic transglycosylase domain-containing protein -
  GB879_RS13100 (GB879_013105) ssb 2543217..2543705 (+) 489 WP_154493054.1 single-stranded DNA-binding protein Machinery gene
  GB879_RS13105 (GB879_013110) tpa 2543874..2545256 (+) 1383 WP_154493056.1 hypotaurine--pyruvate aminotransferase Tpa -
  GB879_RS13110 (GB879_013115) fabA 2545457..2545966 (+) 510 WP_154493058.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  GB879_RS13115 (GB879_013120) fabB 2545988..2547217 (+) 1230 WP_154493060.1 beta-ketoacyl-ACP synthase I -
  GB879_RS13120 (GB879_013125) - 2547238..2548026 (+) 789 WP_263467184.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17509.22 Da        Isoelectric Point: 6.4874

>NTDB_id=716384 GB879_RS13100 WP_154493054.1 2543217..2543705(+) (ssb) [Paracoccus sp. SMMA_5]
MAGSVNKVILVGNLGQDPEIRSFQNGGKVANLRIATSEQWKDRNTGERRERTEWHTVVIYSEPLVRVAEQFLKKGSKVYV
EGQLETRKWQDQAGNDRYSTEVALRPFRSELHMLDGRGGAGGGGRDEGYGGGYAGGYGGGSGGGGSTPAASNRPDFDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=716384 GB879_RS13100 WP_154493054.1 2543217..2543705(+) (ssb) [Paracoccus sp. SMMA_5]
ATGGCAGGCAGCGTGAACAAGGTAATCCTGGTCGGCAATCTGGGGCAGGATCCGGAAATCCGCAGCTTCCAGAACGGTGG
AAAGGTTGCGAATCTGCGCATCGCGACCAGCGAACAGTGGAAGGATCGCAATACCGGCGAACGTCGCGAACGCACCGAAT
GGCATACCGTCGTGATCTATTCCGAACCGCTTGTGCGCGTCGCCGAACAGTTCCTGAAAAAGGGCTCGAAGGTTTACGTG
GAAGGCCAGCTCGAAACCCGCAAGTGGCAGGACCAGGCCGGCAACGACCGTTATTCGACCGAGGTGGCGCTGCGCCCGTT
CCGCAGCGAACTGCATATGCTCGACGGCCGGGGCGGCGCTGGCGGCGGCGGACGTGACGAAGGCTATGGCGGTGGTTACG
CGGGCGGCTATGGTGGCGGCAGCGGTGGCGGCGGCTCAACCCCGGCCGCATCGAACCGGCCCGACTTCGACGACGACATC
CCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X2TGZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.549
  ssb Vibrio cholerae strain A1552

49.153

100

0.537
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.444
  ssb Neisseria meningitidis MC58

40.223

100

0.444