Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ91_RS08040 Genome accession   NZ_CP102145
Coordinates   1599597..1599992 (+) Length   131 a.a.
NCBI ID   WP_105110718.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1594597..1604992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08010 (NQZ91_08010) pepA 1595264..1596325 (-) 1062 WP_257117311.1 glutamyl aminopeptidase -
  NQZ91_RS08015 (NQZ91_08015) - 1596389..1596673 (+) 285 WP_105110723.1 DUF4651 domain-containing protein -
  NQZ91_RS08020 (NQZ91_08020) - 1596670..1596990 (+) 321 WP_105110722.1 thioredoxin family protein -
  NQZ91_RS08025 (NQZ91_08025) - 1596987..1597943 (+) 957 WP_257117313.1 DUF1002 domain-containing protein -
  NQZ91_RS08030 (NQZ91_08030) ytpR 1597962..1598585 (+) 624 WP_257117314.1 YtpR family tRNA-binding protein -
  NQZ91_RS08035 (NQZ91_08035) - 1598775..1599545 (-) 771 WP_257117315.1 DUF2785 domain-containing protein -
  NQZ91_RS08040 (NQZ91_08040) ssbA 1599597..1599992 (+) 396 WP_105110718.1 single-stranded DNA-binding protein Machinery gene
  NQZ91_RS08045 (NQZ91_08045) - 1600309..1600563 (-) 255 WP_257104944.1 hypothetical protein -
  NQZ91_RS08050 (NQZ91_08050) groES 1600754..1601035 (+) 282 WP_105110716.1 co-chaperone GroES -
  NQZ91_RS08055 (NQZ91_08055) - 1601044..1601394 (+) 351 WP_257104943.1 hypothetical protein -
  NQZ91_RS08060 (NQZ91_08060) groL 1601435..1603060 (+) 1626 WP_105110714.1 chaperonin GroEL -
  NQZ91_RS08065 (NQZ91_08065) - 1603167..1603694 (-) 528 WP_172023335.1 GNAT family N-acetyltransferase -
  NQZ91_RS08070 (NQZ91_08070) - 1603841..1604689 (+) 849 WP_257104942.1 patatin family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14822.71 Da        Isoelectric Point: 5.0114

>NTDB_id=714959 NQZ91_RS08040 WP_105110718.1 1599597..1599992(+) (ssbA) [Streptococcus suis strain DNS20]
MYNKVILIGRLTAQPELTQTPSGKNLTRVTVAVNRRFKTESGEREADFINIIFWGKLAETLVSYGSKGSLISLDGELRTR
KYEKDGNNHYVTEVLGNSFQLLESRAQRAMRENNAGEDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=714959 NQZ91_RS08040 WP_105110718.1 1599597..1599992(+) (ssbA) [Streptococcus suis strain DNS20]
ATGTACAATAAAGTTATTCTAATTGGTCGTTTGACGGCCCAGCCTGAGTTGACGCAGACGCCGTCGGGAAAAAATTTAAC
CCGCGTTACAGTTGCTGTCAATCGTCGCTTCAAGACAGAGTCTGGTGAGCGCGAAGCGGATTTCATCAATATCATTTTCT
GGGGTAAATTGGCTGAAACCCTGGTGTCCTACGGTAGCAAGGGCAGCTTGATTTCCCTTGACGGAGAGCTCCGTACTCGT
AAATATGAAAAAGATGGTAATAACCATTATGTGACTGAAGTCCTTGGAAACAGTTTCCAGTTGCTCGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAATGCTGGTGAAGACCTGGCTGACCTGGTTCTAGAAGAGGAGGAACTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374