Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | NP165_RS04385 | Genome accession | NZ_CP102096 |
| Coordinates | 896536..896829 (+) | Length | 97 a.a. |
| NCBI ID | WP_257085102.1 | Uniprot ID | - |
| Organism | Vibrio japonicus strain JCM 31412 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 891536..901829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NP165_RS04370 (NP165_04370) | lon | 891537..893888 (+) | 2352 | WP_257085099.1 | endopeptidase La | - |
| NP165_RS04375 (NP165_04375) | - | 894082..894354 (+) | 273 | WP_257085100.1 | HU family DNA-binding protein | - |
| NP165_RS04380 (NP165_04380) | ppiD | 894523..896382 (+) | 1860 | WP_257085101.1 | peptidylprolyl isomerase | - |
| NP165_RS04385 (NP165_04385) | comEA | 896536..896829 (+) | 294 | WP_257085102.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| NP165_RS04390 (NP165_04390) | cmk | 896969..897649 (+) | 681 | WP_257085103.1 | (d)CMP kinase | - |
| NP165_RS04395 (NP165_04395) | rpsA | 897753..899423 (+) | 1671 | WP_257085104.1 | 30S ribosomal protein S1 | - |
| NP165_RS04400 (NP165_04400) | ihfB | 899636..899917 (+) | 282 | WP_011080796.1 | integration host factor subunit beta | - |
| NP165_RS04405 (NP165_04405) | - | 900057..900335 (+) | 279 | WP_257085105.1 | LapA family protein | - |
| NP165_RS04410 (NP165_04410) | lapB | 900365..901534 (+) | 1170 | WP_257085106.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10664.36 Da Isoelectric Point: 5.1548
>NTDB_id=714345 NP165_RS04385 WP_257085102.1 896536..896829(+) (comEA) [Vibrio japonicus strain JCM 31412]
MVKKLLLVMLLVISSPFSLAAQSEQDPKYEGIEITVNVNQASAQELADLLSGVGLKKAEAIVEYREEHGNFKSVDALVNV
KGIGEALLERNRDRIKL
MVKKLLLVMLLVISSPFSLAAQSEQDPKYEGIEITVNVNQASAQELADLLSGVGLKKAEAIVEYREEHGNFKSVDALVNV
KGIGEALLERNRDRIKL
Nucleotide
Download Length: 294 bp
>NTDB_id=714345 NP165_RS04385 WP_257085102.1 896536..896829(+) (comEA) [Vibrio japonicus strain JCM 31412]
ATGGTGAAAAAACTACTACTTGTAATGCTACTGGTGATATCCAGCCCGTTCAGTTTGGCAGCGCAGAGCGAGCAAGATCC
TAAATATGAAGGGATAGAAATAACCGTTAATGTGAACCAAGCCTCCGCCCAAGAACTTGCAGACCTTCTCTCTGGAGTGG
GGTTAAAGAAAGCGGAAGCGATCGTAGAGTACAGGGAAGAGCACGGAAACTTTAAAAGTGTTGATGCTTTAGTCAACGTC
AAGGGGATTGGTGAAGCATTGCTTGAACGTAACCGTGACAGAATTAAACTATGA
ATGGTGAAAAAACTACTACTTGTAATGCTACTGGTGATATCCAGCCCGTTCAGTTTGGCAGCGCAGAGCGAGCAAGATCC
TAAATATGAAGGGATAGAAATAACCGTTAATGTGAACCAAGCCTCCGCCCAAGAACTTGCAGACCTTCTCTCTGGAGTGG
GGTTAAAGAAAGCGGAAGCGATCGTAGAGTACAGGGAAGAGCACGGAAACTTTAAAAGTGTTGATGCTTTAGTCAACGTC
AAGGGGATTGGTGAAGCATTGCTTGAACGTAACCGTGACAGAATTAAACTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
58.511 |
96.907 |
0.567 |
| comEA | Vibrio campbellii strain DS40M4 |
57.447 |
96.907 |
0.557 |
| comEA | Vibrio cholerae C6706 |
49.505 |
100 |
0.515 |
| comEA | Vibrio cholerae strain A1552 |
49.505 |
100 |
0.515 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.187 |
100 |
0.443 |
| comEA | Acinetobacter baylyi ADP1 |
48.81 |
86.598 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.086 |
95.876 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.086 |
95.876 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.086 |
95.876 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.086 |
95.876 |
0.423 |
| comEA | Legionella pneumophila str. Paris |
36.634 |
100 |
0.381 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.634 |
100 |
0.381 |
| comEA | Acinetobacter baumannii strain A118 |
40.909 |
90.722 |
0.371 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
58.333 |
61.856 |
0.361 |