Detailed information NTG0714262

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: NF392_RS06175
• Genome accession: NZ_CP102089
• Coordinates: 1290007..1290318 (+)
• Length: 103 a.a.
• NCBI ID: WP_029625707.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain H17
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1285007..1295318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF392_RS06145	-	1285782..1285985 (+)	204	WP_002433937.1	YqgQ family protein	-
NF392_RS06150	-	1285982..1286968 (+)	987	WP_023350198.1	ROK family glucokinase	-
NF392_RS06155	-	1286968..1287294 (+)	327	WP_002433945.1	MTH1187 family thiamine-binding protein	-
NF392_RS06160	-	1287294..1287917 (+)	624	WP_049399400.1	MBL fold metallo-hydrolase	-
NF392_RS06165	comGA	1287975..1288949 (+)	975	WP_023350200.1	competence type IV pilus ATPase ComGA	Machinery gene
NF392_RS06170	comGB	1288921..1289988 (+)	1068	WP_260832620.1	competence type IV pilus assembly protein ComGB	-
NF392_RS06175	comGC	1290007..1290318 (+)	312	WP_029625707.1	competence type IV pilus major pilin ComGC	Machinery gene
NF392_RS06180	comGD	1290296..1290745 (+)	450	WP_023350202.1	competence type IV pilus minor pilin ComGD	-
NF392_RS06185	-	1290732..1291031 (+)	300	WP_023350203.1	hypothetical protein	-
NF392_RS06190	comGF	1290949..1291440 (+)	492	WP_037560565.1	competence type IV pilus minor pilin ComGF	-
NF392_RS06200	-	1291610..1292119 (+)	510	WP_029625706.1	shikimate kinase	-
NF392_RS06205	gcvT	1292328..1293419 (+)	1092	WP_023350205.1	glycine cleavage system aminomethyltransferase GcvT	-
NF392_RS06210	gcvPA	1293438..1294784 (+)	1347	WP_023350206.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 103 a.a.
• Molecular weight: 11345.43 Da
• Isoelectric Point: 9.7122

>NTDB_id=714262 NF392_RS06175 WP_029625707.1 1290007..1290318(+) (comGC) [Staphylococcus capitis subsp. capitis strain H17]
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN

Nucleotide

• Length: 312 bp

>NTDB_id=714262 NF392_RS06175 WP_029625707.1 1290007..1290318(+) (comGC) [Staphylococcus capitis subsp. capitis strain H17]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	86.408	100	0.864
comGC	Staphylococcus aureus MW2	86.408	100	0.864
comYC	Streptococcus gordonii str. Challis substr. CH1	45.631	100	0.456
comGC/cglC	Streptococcus mitis SK321	45.098	99.029	0.447
comGC/cglC	Streptococcus pneumoniae Rx1	44.118	99.029	0.437
comGC/cglC	Streptococcus pneumoniae TIGR4	44.118	99.029	0.437
comGC/cglC	Streptococcus pneumoniae D39	44.118	99.029	0.437
comGC/cglC	Streptococcus pneumoniae R6	44.118	99.029	0.437
comGC/cglC	Streptococcus mitis NCTC 12261	48.837	83.495	0.408
comYC	Streptococcus mutans UA159	46.591	85.437	0.398
comYC	Streptococcus mutans UA140	46.591	85.437	0.398
comGC	Lactococcus lactis subsp. cremoris KW2	50.633	76.699	0.388
comYC	Streptococcus suis isolate S10	50	75.728	0.379
comGC	Bacillus subtilis subsp. subtilis str. 168	41.758	88.35	0.369