Detailed information NTG0714261

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: NF392_RS06165
• Genome accession: NZ_CP102089
• Coordinates: 1287975..1288949 (+)
• Length: 324 a.a.
• NCBI ID: WP_023350200.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain H17
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1282975..1293949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF392_RS06130	rpmG	1283488..1283637 (+)	150	WP_002433802.1	50S ribosomal protein L33	-
NF392_RS06135	-	1283786..1284337 (+)	552	WP_030063896.1	5-formyltetrahydrofolate cyclo-ligase	-
NF392_RS06140	-	1284338..1285801 (+)	1464	WP_023350197.1	rhomboid family intramembrane serine protease	-
NF392_RS06145	-	1285782..1285985 (+)	204	WP_002433937.1	YqgQ family protein	-
NF392_RS06150	-	1285982..1286968 (+)	987	WP_023350198.1	ROK family glucokinase	-
NF392_RS06155	-	1286968..1287294 (+)	327	WP_002433945.1	MTH1187 family thiamine-binding protein	-
NF392_RS06160	-	1287294..1287917 (+)	624	WP_049399400.1	MBL fold metallo-hydrolase	-
NF392_RS06165	comGA	1287975..1288949 (+)	975	WP_023350200.1	competence type IV pilus ATPase ComGA	Machinery gene
NF392_RS06170	comGB	1288921..1289988 (+)	1068	WP_260832620.1	competence type IV pilus assembly protein ComGB	-
NF392_RS06175	comGC	1290007..1290318 (+)	312	WP_029625707.1	competence type IV pilus major pilin ComGC	Machinery gene
NF392_RS06180	comGD	1290296..1290745 (+)	450	WP_023350202.1	competence type IV pilus minor pilin ComGD	-
NF392_RS06185	-	1290732..1291031 (+)	300	WP_023350203.1	hypothetical protein	-
NF392_RS06190	comGF	1290949..1291440 (+)	492	WP_037560565.1	competence type IV pilus minor pilin ComGF	-
NF392_RS06200	-	1291610..1292119 (+)	510	WP_029625706.1	shikimate kinase	-
NF392_RS06205	gcvT	1292328..1293419 (+)	1092	WP_023350205.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37044.84 Da
• Isoelectric Point: 7.7305

>NTDB_id=714261 NF392_RS06165 WP_023350200.1 1287975..1288949(+) (comGA) [Staphylococcus capitis subsp. capitis strain H17]
MKILFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSFKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT

Nucleotide

• Length: 975 bp

>NTDB_id=714261 NF392_RS06165 WP_023350200.1 1287975..1288949(+) (comGA) [Staphylococcus capitis subsp. capitis strain H17]
ATGAAAATATTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAGGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGGATAAA
TTATACTAACTCTTTTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCTAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAACACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (8-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.898	99.691	0.707
comGA	Staphylococcus aureus N315	70.898	99.691	0.707