Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PPM34_RS13920 Genome accession   NZ_CP116869
Coordinates   2709037..2709747 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2704037..2714747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS13900 cysK 2704088..2705023 (+) 936 WP_003229237.1 cysteine synthase A -
  PPM34_RS13905 pepV 2705057..2706448 (-) 1392 WP_004399126.1 dipeptidase PepV -
  PPM34_RS13910 pbuO 2706545..2707843 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  PPM34_RS13915 ythQ 2707883..2709040 (-) 1158 WP_003229232.1 ABC transporter permease -
  PPM34_RS13920 pptA 2709037..2709747 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  PPM34_RS13925 ytzE 2710038..2710259 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  PPM34_RS13930 rsuA 2710380..2711099 (-) 720 WP_003229226.1 pseudouridine synthase -
  PPM34_RS13935 murJ 2711168..2712802 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  PPM34_RS13940 ytfP 2713004..2714266 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=713733 PPM34_RS13920 WP_003229230.1 2709037..2709747(-) (pptA) [Bacillus subtilis subsp. subtilis strain MGP001]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=713733 PPM34_RS13920 WP_003229230.1 2709037..2709747(-) (pptA) [Bacillus subtilis subsp. subtilis strain MGP001]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432