Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NMT99_RS18705 Genome accession   NZ_CP101290
Coordinates   3621554..3621895 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain LjM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3616554..3626895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS18690 hepAB 3616797..3619565 (+) 2769 WP_069703626.1 DEAD/DEAH box helicase -
  NMT99_RS18695 ywpJ 3619691..3620548 (-) 858 WP_069703625.1 phosphatase YwpJ -
  NMT99_RS18700 glcR 3620554..3621330 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  NMT99_RS18705 ssbB 3621554..3621895 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  NMT99_RS18710 ywpG 3621972..3622355 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  NMT99_RS18715 ywpF 3622530..3622940 (+) 411 WP_014481144.1 YwpF-like family protein -
  NMT99_RS18720 - 3623080..3623472 (-) 393 Protein_3634 class A sortase -
  NMT99_RS21305 - 3623534..3623686 (-) 153 Protein_3635 prealbumin-like fold domain-containing protein -
  NMT99_RS18730 ywpD 3623720..3624555 (+) 836 Protein_3636 sensor histidine kinase -
  NMT99_RS18735 mscL 3624603..3624998 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  NMT99_RS18740 fabZ 3625071..3625496 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NMT99_RS18745 rapD 3625688..3626752 (+) 1065 WP_029726041.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=709507 NMT99_RS18705 WP_003227798.1 3621554..3621895(-) (ssbB) [Bacillus subtilis strain LjM2]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=709507 NMT99_RS18705 WP_003227798.1 3621554..3621895(-) (ssbB) [Bacillus subtilis strain LjM2]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389