Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NL113_RS12660 Genome accession   NZ_CP101130
Coordinates   2568743..2569084 (+) Length   113 a.a.
NCBI ID   WP_006639351.1    Uniprot ID   A0A7Y8S016
Organism   Bacillus sp. KRF7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2563743..2574084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS12630 mbl 2563955..2564956 (+) 1002 WP_006639357.1 cell shape-determining protein Mbl -
  NL113_RS12635 - 2565160..2565999 (+) 840 WP_006639356.1 flagellar hook-basal body protein -
  NL113_RS12640 - 2566061..2566885 (+) 825 WP_006639355.1 flagellar hook-basal body protein -
  NL113_RS12645 fabZ 2567119..2567553 (+) 435 WP_006639354.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NL113_RS12650 mscL 2567627..2568016 (+) 390 WP_006639353.1 large conductance mechanosensitive channel protein MscL -
  NL113_RS12655 - 2568058..2568471 (-) 414 WP_006639352.1 YwpF-like family protein -
  NL113_RS12660 ssbB 2568743..2569084 (+) 342 WP_006639351.1 single-stranded DNA-binding protein Machinery gene
  NL113_RS12665 - 2569306..2570268 (+) 963 WP_029419610.1 sugar-binding transcriptional regulator -
  NL113_RS12670 - 2570265..2570708 (+) 444 WP_006639349.1 transcriptional regulator GutM -
  NL113_RS12675 - 2570705..2571253 (+) 549 WP_006639348.1 PTS glucitol/sorbitol transporter subunit IIC -
  NL113_RS12680 - 2571270..2572277 (+) 1008 WP_006639347.1 PTS glucitol/sorbitol transporter subunit IIB -
  NL113_RS12685 - 2572301..2572666 (+) 366 WP_006639346.1 PTS glucitol/sorbitol transporter subunit IIA -
  NL113_RS12690 srlD 2572684..2573469 (+) 786 WP_006639345.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12603.40 Da        Isoelectric Point: 9.9328

>NTDB_id=708963 NL113_RS12660 WP_006639351.1 2568743..2569084(+) (ssbB) [Bacillus sp. KRF7]
MFNQIMLVGRLTKDPELRYTSDGVPVANITLAVSRHFKNAAGKIETDFVNCTLWRKTAENTADYCSKGSIVGLNGRIQTR
HYVNSEGKRIFLTEVVARSAHFLGGKTRETAEI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=708963 NL113_RS12660 WP_006639351.1 2568743..2569084(+) (ssbB) [Bacillus sp. KRF7]
ATGTTTAATCAGATCATGCTGGTCGGGCGTTTAACGAAGGACCCGGAGCTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATATTACTTTGGCTGTCAGCAGGCATTTCAAAAATGCCGCAGGCAAAATTGAAACGGACTTTGTCAATTGCACATTGT
GGCGAAAAACGGCTGAAAATACGGCTGACTATTGCAGCAAAGGCTCTATTGTCGGCTTGAACGGCAGAATTCAAACACGC
CATTATGTGAATTCAGAAGGGAAACGCATCTTTCTAACAGAAGTCGTCGCCCGCTCCGCTCATTTTTTGGGCGGAAAAAC
CCGCGAAACCGCAGAGATCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8S016

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.568

98.23

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.075

94.69

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

51.402

94.69

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

95.575

0.407
  ssbA Streptococcus mutans UA159

40.741

95.575

0.389
  ssbB Lactococcus lactis subsp. cremoris KW2

37.719

100

0.381
  ssb Vibrio cholerae strain A1552

36.842

100

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

37.963

95.575

0.363
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.963

95.575

0.363
  ssb Neisseria meningitidis MC58

37.963

95.575

0.363
  ssb Neisseria gonorrhoeae MS11

37.963

95.575

0.363