Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NLV76_RS18510 Genome accession   NZ_CP100752
Coordinates   3617469..3617810 (-) Length   113 a.a.
NCBI ID   WP_254501692.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3612469..3622810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS18495 (NLV76_18495) - 3612705..3615480 (+) 2776 Protein_3596 DEAD/DEAH box helicase -
  NLV76_RS18500 (NLV76_18500) - 3615603..3616460 (-) 858 WP_254501691.1 Cof-type HAD-IIB family hydrolase -
  NLV76_RS18505 (NLV76_18505) - 3616466..3617242 (-) 777 WP_044160375.1 DeoR/GlpR family DNA-binding transcription regulator -
  NLV76_RS18510 (NLV76_18510) ssbB 3617469..3617810 (-) 342 WP_254501692.1 single-stranded DNA-binding protein SsbB Machinery gene
  NLV76_RS18515 (NLV76_18515) - 3617888..3618271 (-) 384 WP_254501693.1 hypothetical protein -
  NLV76_RS18520 (NLV76_18520) - 3618448..3618858 (+) 411 WP_044159655.1 YwpF-like family protein -
  NLV76_RS18525 (NLV76_18525) blaOXA 3618912..3619715 (+) 804 WP_202646677.1 class D beta-lactamase -
  NLV76_RS18530 (NLV76_18530) mscL 3619748..3620140 (-) 393 WP_254501694.1 large conductance mechanosensitive channel protein MscL -
  NLV76_RS18535 (NLV76_18535) fabZ 3620211..3620636 (-) 426 WP_024123116.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NLV76_RS18540 (NLV76_18540) - 3620830..3621894 (+) 1065 WP_254501695.1 tetratricopeptide repeat protein -
  NLV76_RS18545 (NLV76_18545) - 3621916..3622725 (-) 810 WP_254501696.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12556.30 Da        Isoelectric Point: 8.2644

>NTDB_id=706715 NLV76_RS18510 WP_254501692.1 3617469..3617810(-) (ssbB) [Bacillus halotolerans strain MEC_B301]
MFNQVMLVGRLTKDPEPRYTSACAAVTHITIAVNRSFKNASGEVEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SHENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=706715 NLV76_RS18510 WP_254501692.1 3617469..3617810(-) (ssbB) [Bacillus halotolerans strain MEC_B301]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCCTCGGTACACTTCCGCGTGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAGTTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCCTAAGCGGACGTATTCAGACAAGG
AGCCATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

89.381

100

0.894
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

93.805

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

93.805

0.513
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.296

95.575

0.442
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

42.593

95.575

0.407
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae D39

41.667

95.575

0.398
  ssbB/cilA Streptococcus pneumoniae R6

41.667

95.575

0.398
  ssbB/cilA Streptococcus mitis SK321

41.667

95.575

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

39.048

92.92

0.363