Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   FGCSD_RS01150 Genome accession   NZ_AP018726
Coordinates   205221..205547 (+) Length   108 a.a.
NCBI ID   WP_111714771.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200221..210547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS01135 (FGCSD_0178) - 202865..203230 (+) 366 WP_129555183.1 DUF1033 family protein -
  FGCSD_RS01140 (FGCSD_0179) comYA 203311..204252 (+) 942 WP_129555184.1 competence type IV pilus ATPase ComGA Machinery gene
  FGCSD_RS01145 (FGCSD_0180) comYB 204188..205219 (+) 1032 WP_129556365.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGCSD_RS01150 (FGCSD_0181) comYC 205221..205547 (+) 327 WP_111714771.1 competence type IV pilus major pilin ComGC Machinery gene
  FGCSD_RS11205 (FGCSD_0182) comGD 205522..205950 (+) 429 WP_129555185.1 competence type IV pilus minor pilin ComGD -
  FGCSD_RS01160 (FGCSD_0183) comGE 205907..206203 (+) 297 WP_129555186.1 competence type IV pilus minor pilin ComGE -
  FGCSD_RS01165 (FGCSD_0184) comGF 206184..206624 (+) 441 WP_129555187.1 competence type IV pilus minor pilin ComGF -
  FGCSD_RS01170 (FGCSD_0185) comGG 206602..206976 (+) 375 WP_129555188.1 competence type IV pilus minor pilin ComGG -
  FGCSD_RS01175 (FGCSD_0186) comYH 207039..207992 (+) 954 WP_129555189.1 class I SAM-dependent methyltransferase Machinery gene
  FGCSD_RS01180 (FGCSD_0187) - 208051..209247 (+) 1197 WP_129555190.1 acetate kinase -
  FGCSD_RS01185 (FGCSD_0188) - 209553..209760 (+) 208 Protein_180 helix-turn-helix transcriptional regulator -
  FGCSD_RS01190 (FGCSD_0189) - 209863..210543 (+) 681 WP_129555191.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12345.34 Da        Isoelectric Point: 9.6248

>NTDB_id=70561 FGCSD_RS01150 WP_111714771.1 205221..205547(+) (comYC) [Streptococcus dysgalactiae strain Kdys0611]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYEKHTNEKSSLKP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=70561 FGCSD_RS01150 WP_111714771.1 205221..205547(+) (comYC) [Streptococcus dysgalactiae strain Kdys0611]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCAAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTACGAAAAACATACCAATGAAAAGTCCAGTCTTAA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

58.416

93.519

0.546
  comGC Lactococcus lactis subsp. cremoris KW2

53.271

99.074

0.528
  comGC/cglC Streptococcus mitis SK321

56.566

91.667

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae D39

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae R6

54.545

91.667

0.5
  comYC Streptococcus mutans UA140

56.383

87.037

0.491
  comYC Streptococcus mutans UA159

56.383

87.037

0.491
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417

Multiple sequence alignment