Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NHM04_RS14445 Genome accession   NZ_CP100350
Coordinates   3309390..3310649 (-) Length   419 a.a.
NCBI ID   WP_254264465.1    Uniprot ID   A0A9J7A3X1
Organism   Gilvimarinus sp. DA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3304390..3315649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS14420 (NHM04_14420) argJ 3304654..3305874 (+) 1221 WP_254264460.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  NHM04_RS14425 (NHM04_14425) - 3305887..3306849 (+) 963 WP_254264461.1 Nudix family hydrolase -
  NHM04_RS14430 (NHM04_14430) yacG 3306893..3307081 (-) 189 WP_254264462.1 DNA gyrase inhibitor YacG -
  NHM04_RS14435 (NHM04_14435) coaE 3307111..3307719 (-) 609 WP_254264463.1 dephospho-CoA kinase -
  NHM04_RS14440 (NHM04_14440) pilD 3308524..3309381 (-) 858 WP_254264464.1 A24 family peptidase Machinery gene
  NHM04_RS14445 (NHM04_14445) pilC 3309390..3310649 (-) 1260 WP_254264465.1 type II secretion system F family protein Machinery gene
  NHM04_RS14450 (NHM04_14450) pilB 3310653..3312359 (-) 1707 WP_254264466.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NHM04_RS14460 (NHM04_14460) pilA/pilA1 3312686..3313108 (+) 423 WP_305881949.1 pilin Machinery gene
  NHM04_RS14470 (NHM04_14470) pilA/pilA1 3313174..3313587 (+) 414 WP_305881950.1 pilin Machinery gene
  NHM04_RS14475 (NHM04_14475) - 3313662..3314027 (+) 366 WP_254264467.1 transposase -
  NHM04_RS14480 (NHM04_14480) - 3313979..3314503 (+) 525 WP_254264468.1 hypothetical protein -
  NHM04_RS14485 (NHM04_14485) nadC 3314572..3315435 (-) 864 WP_254264469.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45824.96 Da        Isoelectric Point: 9.9667

>NTDB_id=704707 NHM04_RS14445 WP_254264465.1 3309390..3310649(-) (pilC) [Gilvimarinus sp. DA14]
MATATATKTSKTRRNTKAITSQAYLYKAFDKKGKAVQGEISGTSPALIRAQLQKQGFVVKTVKKKPKPLFGSGKKKIKPS
DIAVFSRQMATMMKAGVPLVQAFEIVADGVDNPSVKDLIFEIRDDVASGTGFAPSLRKHPRYFDDLFCNLVEAGEQSGAL
ETMLDRIATYKEKTEALKAKIKKALTYPIAVVVVAIIVTAILLVKVVPQFAETFGSFGAELPAFTLFVLHLSELAQAYWL
YFFVALILAFFAFKELKLRNKKFAYLVDRFSLKIPIIGDILYQSVMARFARTLATTFAAGVPLIDALTSVAGAAGNRIYA
DAILRVREEVSTGVQLNTAIRNQGIFPSLLIQMASIGEESGALDEMLDKVAKYYEDEVDNKVDSLSSLLEPMIMAVLGVL
VGGLMIAMYMPIFQIGQVV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=704707 NHM04_RS14445 WP_254264465.1 3309390..3310649(-) (pilC) [Gilvimarinus sp. DA14]
ATGGCCACTGCAACTGCAACAAAAACAAGTAAAACTAGACGCAACACCAAAGCAATTACCAGCCAAGCTTATTTATATAA
GGCGTTCGACAAAAAAGGCAAAGCTGTACAGGGCGAGATATCAGGAACAAGTCCCGCGTTAATACGAGCACAGCTACAAA
AGCAAGGCTTTGTCGTTAAAACTGTCAAAAAGAAACCAAAACCCCTGTTTGGCAGCGGCAAAAAGAAAATTAAACCCAGC
GATATTGCGGTATTCTCCCGCCAGATGGCGACCATGATGAAAGCGGGCGTACCACTAGTTCAAGCCTTTGAAATTGTCGC
TGACGGCGTAGACAACCCTTCCGTGAAAGATCTAATTTTCGAGATCCGGGACGACGTAGCCTCCGGCACGGGCTTTGCCC
CATCTCTGCGTAAGCACCCTCGCTACTTTGACGATTTATTTTGCAATCTAGTTGAAGCGGGCGAACAGTCCGGCGCACTG
GAAACAATGCTAGATCGTATCGCAACGTATAAAGAAAAAACCGAAGCTCTAAAAGCAAAAATTAAAAAAGCACTAACCTA
CCCCATCGCGGTCGTTGTAGTTGCCATTATTGTTACCGCCATTCTTCTCGTAAAAGTGGTTCCTCAGTTTGCTGAAACTT
TTGGCAGCTTTGGTGCCGAGCTGCCAGCCTTCACGCTGTTTGTATTGCACTTATCTGAACTCGCTCAAGCTTACTGGCTT
TACTTTTTTGTAGCTCTAATTTTAGCTTTTTTTGCATTTAAAGAATTAAAGCTTCGAAATAAAAAGTTTGCATATTTAGT
AGATAGATTCTCTTTAAAAATACCCATTATTGGAGACATCCTCTATCAGTCTGTTATGGCCAGATTTGCTCGAACGCTAG
CCACCACTTTCGCAGCTGGTGTACCTCTAATTGATGCTTTGACTTCTGTCGCAGGCGCGGCCGGCAATAGGATATACGCT
GATGCAATCCTACGAGTGAGAGAAGAGGTATCTACCGGCGTCCAGCTGAACACTGCGATTCGAAATCAAGGTATATTCCC
ATCGCTATTAATTCAAATGGCCTCTATCGGTGAGGAGTCGGGCGCGTTAGATGAAATGCTCGACAAAGTAGCCAAATACT
ATGAGGACGAGGTAGACAACAAAGTGGACAGTCTGTCCTCATTACTTGAGCCCATGATCATGGCTGTTCTGGGTGTGCTA
GTGGGCGGCTTGATGATAGCGATGTACATGCCAATCTTCCAGATCGGGCAGGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.283

96.181

0.599
  pilC Acinetobacter baumannii D1279779

56.931

96.42

0.549
  pilC Acinetobacter baylyi ADP1

57.431

94.749

0.544
  pilC Legionella pneumophila strain ERS1305867

56.566

94.511

0.535
  pilG Neisseria gonorrhoeae MS11

45.596

92.124

0.42
  pilG Neisseria meningitidis 44/76-A

45.596

92.124

0.42
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

39.698

94.988

0.377