Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NHM04_RS14440 Genome accession   NZ_CP100350
Coordinates   3308524..3309381 (-) Length   285 a.a.
NCBI ID   WP_254264464.1    Uniprot ID   A0A9J7A565
Organism   Gilvimarinus sp. DA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3303524..3314381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM04_RS14420 (NHM04_14420) argJ 3304654..3305874 (+) 1221 WP_254264460.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  NHM04_RS14425 (NHM04_14425) - 3305887..3306849 (+) 963 WP_254264461.1 Nudix family hydrolase -
  NHM04_RS14430 (NHM04_14430) yacG 3306893..3307081 (-) 189 WP_254264462.1 DNA gyrase inhibitor YacG -
  NHM04_RS14435 (NHM04_14435) coaE 3307111..3307719 (-) 609 WP_254264463.1 dephospho-CoA kinase -
  NHM04_RS14440 (NHM04_14440) pilD 3308524..3309381 (-) 858 WP_254264464.1 A24 family peptidase Machinery gene
  NHM04_RS14445 (NHM04_14445) pilC 3309390..3310649 (-) 1260 WP_254264465.1 type II secretion system F family protein Machinery gene
  NHM04_RS14450 (NHM04_14450) pilB 3310653..3312359 (-) 1707 WP_254264466.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NHM04_RS14460 (NHM04_14460) pilA/pilA1 3312686..3313108 (+) 423 WP_305881949.1 pilin Machinery gene
  NHM04_RS14470 (NHM04_14470) pilA/pilA1 3313174..3313587 (+) 414 WP_305881950.1 pilin Machinery gene
  NHM04_RS14475 (NHM04_14475) - 3313662..3314027 (+) 366 WP_254264467.1 transposase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31550.94 Da        Isoelectric Point: 7.8004

>NTDB_id=704706 NHM04_RS14440 WP_254264464.1 3308524..3309381(-) (pilD) [Gilvimarinus sp. DA14]
MIEQLPSWFIYLCTCFFGLALGSFLNVLILRLPKILETSWKSQCCELLEQPAPADEKLGLAFPASHCPKCKTPIKPWQNI
PVISYLLLKGRCANCQVRISPRYPIIELATALLSVAVVFYFGVTWQAAAVLVFTWALLTLTVIDFDTQLLPDNITLPLLW
LGLIVNSFGLITDLPSALWGAVFGYLSLWSVFWVFKLLTGKEGMGYGDFKLLAALGAWMGWQMLPLIIILSSLVGALIGV
ALIVIKGRDKNIPIPFGPYLAIAGWIAMLWGDEIVARYLQIAMVG

Nucleotide


Download         Length: 858 bp        

>NTDB_id=704706 NHM04_RS14440 WP_254264464.1 3308524..3309381(-) (pilD) [Gilvimarinus sp. DA14]
ATGATAGAACAATTACCATCTTGGTTTATATATTTATGCACATGTTTCTTTGGCTTAGCATTAGGCAGCTTTCTAAACGT
CCTAATCCTCCGTCTACCCAAAATATTGGAGACCTCCTGGAAAAGCCAATGTTGCGAGCTACTGGAACAACCAGCCCCGG
CCGATGAAAAACTGGGACTGGCTTTTCCCGCCAGCCATTGCCCCAAGTGTAAAACACCCATTAAGCCCTGGCAGAATATT
CCGGTTATTAGTTATTTACTGCTAAAAGGTCGCTGCGCCAATTGCCAGGTTCGTATATCGCCGCGCTACCCAATTATTGA
ACTGGCAACCGCACTGCTGTCGGTAGCGGTGGTGTTTTATTTTGGCGTTACCTGGCAGGCGGCGGCGGTGTTGGTTTTTA
CCTGGGCGCTGCTAACGCTAACGGTTATTGATTTTGACACCCAATTGTTGCCGGATAACATCACCTTGCCGCTGCTGTGG
CTGGGGTTAATTGTGAACAGCTTTGGCCTGATAACCGACTTACCCAGCGCCCTGTGGGGGGCGGTATTTGGTTATTTGTC
ACTATGGTCGGTGTTTTGGGTGTTTAAGCTGTTAACCGGCAAAGAGGGCATGGGCTACGGTGACTTTAAACTGCTGGCCG
CCCTGGGCGCCTGGATGGGCTGGCAGATGCTGCCCTTAATTATCATTTTATCGTCGCTGGTGGGTGCGTTAATTGGCGTT
GCACTGATTGTGATTAAAGGTCGGGATAAAAATATTCCCATTCCCTTTGGGCCTTACCTGGCCATTGCCGGATGGATTGC
CATGCTGTGGGGGGATGAGATTGTCGCGCGGTATTTGCAGATAGCGATGGTGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(131-240)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

57.353

95.439

0.547
  pilD Acinetobacter nosocomialis M2

56.985

95.439

0.544
  pilD Vibrio campbellii strain DS40M4

50.538

97.895

0.495
  pilD Vibrio cholerae strain A1552

51.273

96.491

0.495
  pilD Neisseria gonorrhoeae MS11

50.579

90.877

0.46