Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PDI57_RS06525 Genome accession   NZ_CP115476
Coordinates   1322931..1323704 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain HP20814-006     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317931..1328704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI57_RS06505 (PDI57_06505) - 1318213..1319532 (-) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  PDI57_RS06510 (PDI57_06510) xerC 1319999..1320895 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  PDI57_RS06515 (PDI57_06515) hslV 1320892..1321437 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  PDI57_RS06520 (PDI57_06520) hslU 1321503..1322906 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  PDI57_RS06525 (PDI57_06525) codY 1322931..1323704 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PDI57_RS06530 (PDI57_06530) - 1323778..1323852 (+) 75 WP_031761472.1 hypothetical protein -
  PDI57_RS06535 (PDI57_06535) rpsB 1324051..1324818 (+) 768 WP_000268486.1 30S ribosomal protein S2 -
  PDI57_RS06540 (PDI57_06540) - 1324852..1324965 (+) 114 WP_001789890.1 hypothetical protein -
  PDI57_RS06545 (PDI57_06545) tsf 1325000..1325881 (+) 882 WP_000201392.1 translation elongation factor Ts -
  PDI57_RS06550 (PDI57_06550) pyrH 1326018..1326740 (+) 723 WP_000057330.1 UMP kinase -
  PDI57_RS06555 (PDI57_06555) frr 1326759..1327313 (+) 555 WP_001280006.1 ribosome recycling factor -
  PDI57_RS06560 (PDI57_06560) - 1327686..1328456 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=704533 PDI57_RS06525 WP_000055337.1 1322931..1323704(+) (codY) [Staphylococcus aureus strain HP20814-006]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=704533 PDI57_RS06525 WP_000055337.1 1322931..1323704(+) (codY) [Staphylococcus aureus strain HP20814-006]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428