Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VRUMOI_RS01185 Genome accession   NZ_AP018685
Coordinates   265752..267548 (+) Length   598 a.a.
NCBI ID   WP_231897470.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 260752..272548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS01165 pilM 263023..264039 (+) 1017 WP_089139976.1 type IV pilus assembly protein PilM Machinery gene
  VRUMOI_RS01170 pilN 264029..264619 (+) 591 WP_089139977.1 PilN domain-containing protein Machinery gene
  VRUMOI_RS01175 pilO 264619..265203 (+) 585 WP_089140077.1 type 4a pilus biogenesis protein PilO Machinery gene
  VRUMOI_RS01180 pilP 265200..265709 (+) 510 WP_089139978.1 pilus assembly protein PilP Machinery gene
  VRUMOI_RS01185 pilQ 265752..267548 (+) 1797 WP_231897470.1 type IV pilus secretin PilQ family protein Machinery gene
  VRUMOI_RS01190 aroK 267791..268309 (+) 519 WP_089139979.1 shikimate kinase AroK -
  VRUMOI_RS01195 aroB 268334..269416 (+) 1083 WP_089139980.1 3-dehydroquinate synthase -
  VRUMOI_RS01200 - 269549..270994 (+) 1446 WP_089139981.1 AAA family ATPase -
  VRUMOI_RS01205 - 271092..271913 (+) 822 WP_089139982.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 64663.42 Da        Isoelectric Point: 4.8052

>NTDB_id=70353 VRUMOI_RS01185 WP_231897470.1 265752..267548(+) (pilQ) [Vibrio rumoiensis strain FERM P-14531]
MHKGLTLTAWVRQFTLMSTIACTLLSGHSALAATTSSKKEVSQSSEQGLSNQFIGLDFRLNKEKEGVIVVKLASSASAVD
IKKNPQGLSIDLIHTQVKDDDLYVIDVNDFSTAVKTVEVFRDKPNTRLQASISGDFTYDYRLKGNNLEITVTEVKPKAKS
TAVKQKNALDKENKVISINFQDIPVRNVLQLIADYNGFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNV
VLVAPKAELDAQQKQRLEQARMEEELGDLSSELIQINFAKASDIAELIGGEGDISMLSSRGNITVDERTNSLLIRDLQSN
IEIIKGIVESLDIPVKQVQIEARIVTVNEGNMQDLGVRWGIAETNGSFSAGGSIESNVGQIGIADGRDGIDLNGGNKKVG
LDDFLNVNLAATSSNASSIAFQVAKLGSDTLLDLELSALQAESKAEIISSPRLITTNKQPAYIEQGTEIPYLEASSSGAT
SVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGSVVKTGDGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHSVQTSVD
KVPLLGDIPYLGALFRRSYENYGKSELLIFVTPKVVLQ

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=70353 VRUMOI_RS01185 WP_231897470.1 265752..267548(+) (pilQ) [Vibrio rumoiensis strain FERM P-14531]
ATGCATAAAGGATTAACGCTGACAGCTTGGGTTCGCCAATTTACGTTGATGTCGACCATTGCCTGTACACTTCTTTCGGG
ACACTCTGCTTTAGCTGCAACAACATCGAGTAAAAAGGAGGTAAGTCAATCATCGGAACAGGGTTTAAGTAATCAGTTTA
TCGGCCTCGATTTTCGTCTAAATAAAGAGAAAGAAGGGGTGATCGTGGTAAAGCTCGCGTCATCGGCTTCCGCGGTAGAT
ATTAAGAAAAACCCTCAAGGTTTGAGTATTGATTTGATCCATACTCAAGTGAAAGATGATGATTTATATGTCATTGATGT
CAATGATTTCTCAACGGCGGTGAAGACCGTTGAAGTGTTTCGGGATAAACCGAATACTCGTTTACAAGCCTCTATATCGG
GTGACTTTACTTATGATTATCGTCTTAAAGGTAACAACTTAGAAATCACGGTGACAGAGGTAAAACCCAAGGCCAAATCG
ACCGCAGTAAAACAAAAAAACGCTTTGGATAAAGAAAACAAAGTGATTTCGATAAACTTCCAAGACATTCCGGTTAGAAA
TGTATTACAGCTAATTGCCGATTATAACGGCTTTAACTTAGTGGTTTCCGATTCGGTCACCGGTAATCTCACGCTACGAT
TAGATGGTGTACCTTGGCAACAAGTGCTGGACATTATTTTGCAAGTTAAAGGGTTGGATAAAAGGGTAGAAGGCAATGTC
GTGCTGGTTGCTCCAAAAGCTGAATTGGATGCTCAGCAAAAACAACGTTTAGAGCAAGCGCGCATGGAAGAAGAGTTAGG
TGATTTAAGCTCTGAATTAATTCAAATTAATTTTGCTAAAGCGTCAGATATTGCCGAATTGATTGGCGGTGAAGGTGATA
TTAGCATGCTATCGAGTCGCGGTAATATTACTGTCGATGAGCGTACCAATTCGTTACTCATTCGTGATTTACAAAGCAAT
ATTGAGATCATCAAAGGAATTGTTGAATCATTGGATATTCCAGTGAAGCAAGTTCAAATTGAAGCGCGAATTGTGACGGT
CAATGAAGGTAATATGCAAGACTTGGGCGTTCGCTGGGGCATTGCGGAAACTAACGGTTCATTTTCTGCGGGCGGTTCAA
TTGAGAGTAATGTCGGGCAGATTGGTATTGCAGATGGAAGAGATGGTATTGATCTCAATGGCGGTAATAAAAAAGTGGGA
CTTGATGACTTCTTGAATGTCAATTTAGCGGCTACTAGCTCTAATGCATCGAGTATCGCGTTTCAAGTGGCCAAATTGGG
TTCAGATACTTTACTTGATTTAGAACTCTCAGCATTACAAGCTGAATCGAAAGCAGAAATTATTTCTAGTCCACGTTTGA
TCACAACCAATAAGCAACCGGCTTATATCGAGCAAGGTACAGAAATCCCATATCTTGAAGCTTCATCGAGTGGTGCTACT
TCGGTCAGTTTTAAAAAGGCAGTGTTAAGTTTAAAAGTGACACCACAAATCACACCAGATAACAGACTCGTTTTAGATTT
GAGTGTCACTCAAGATAGACCTGGCTCGGTGGTAAAAACCGGTGATGGTGAAGCGGTCGCTATTGATACTCAACGCATTG
GCACTCAAGTTTTGGTGAATAATGGAGAGACGGTTGTTTTAGGTGGAATTTATCAACATTCGGTTCAGACCAGTGTCGAT
AAAGTGCCTTTATTAGGGGATATTCCTTATTTAGGTGCGTTATTCCGCCGTAGTTATGAGAATTATGGCAAAAGTGAGTT
ATTGATTTTTGTTACACCAAAAGTAGTCTTACAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(438-596)

Bacterial type II/III secretion system short domain (Secretin_N)

(272-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

74.775

92.809

0.694
  pilQ Vibrio cholerae strain A1552

69.64

97.492

0.679
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

69.64

97.492

0.679
  pilQ Pseudomonas aeruginosa PAK

41.906

92.977

0.39
  pilQ Acinetobacter baumannii D1279779

38.245

100

0.386
  pilQ Legionella pneumophila strain Lp02

40.853

94.147

0.385
  pilQ Legionella pneumophila strain ERS1305867

40.853

94.147

0.385
  pilQ Acinetobacter baumannii strain A118

37.977

100

0.383
  comQ Acinetobacter baylyi ADP1

37.522

97.157

0.365

Multiple sequence alignment