Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP07_RS20995 Genome accession   NZ_CP115298
Coordinates   4537205..4537762 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   G3XD84
Organism   Pseudomonas aeruginosa strain 37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4532205..4542762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP07_RS20975 (PCP07_20955) pilR 4533481..4534818 (+) 1338 WP_003110427.1 two-component system response regulator PilR -
  PCP07_RS20980 (PCP07_20960) thiO 4534864..4535958 (-) 1095 WP_012614545.1 glycine oxidase ThiO -
  PCP07_RS20985 (PCP07_20965) - 4536093..4536602 (+) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PCP07_RS20990 (PCP07_20970) - 4536708..4537214 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PCP07_RS20995 (PCP07_20975) pilV 4537205..4537762 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP07_RS21000 (PCP07_20980) pilW 4537759..4538583 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP07_RS21005 (PCP07_20985) pilX 4538580..4539167 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP07_RS21010 (PCP07_20990) pilY1 4539179..4542670 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=702932 PCP07_RS20995 WP_003119423.1 4537205..4537762(+) (pilV) [Pseudomonas aeruginosa strain 37]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=702932 PCP07_RS20995 WP_003119423.1 4537205..4537762(+) (pilV) [Pseudomonas aeruginosa strain 37]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995