Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP07_RS21020 Genome accession   NZ_CP115298
Coordinates   4543016..4543441 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4538016..4548441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP07_RS21005 (PCP07_20985) pilX 4538580..4539167 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP07_RS21010 (PCP07_20990) pilY1 4539179..4542670 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  PCP07_RS21015 (PCP07_20995) pilY2 4542672..4543019 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP07_RS21020 (PCP07_21000) comF 4543016..4543441 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP07_RS21025 (PCP07_21005) ispH 4543488..4544432 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP07_RS21030 (PCP07_21010) fkpB 4544518..4544958 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP07_RS21035 (PCP07_21015) lspA 4544951..4545460 (-) 510 WP_003102615.1 signal peptidase II -
  PCP07_RS21040 (PCP07_21020) ileS 4545453..4548284 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=702933 PCP07_RS21020 WP_003094721.1 4543016..4543441(+) (comF) [Pseudomonas aeruginosa strain 37]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=702933 PCP07_RS21020 WP_003094721.1 4543016..4543441(+) (comF) [Pseudomonas aeruginosa strain 37]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383