Detailed information NTG0702935

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI375_RS12460
• Genome accession: NZ_CP099956
• Coordinates: 2741304..2742173 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain Isc15A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2736304..2747173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI375_RS12440 (NI375_12640)	nadC	2736686..2737573 (+)	888	WP_308386869.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NI375_RS12445 (NI375_12645)	pilA	2737836..2738306 (+)	471	WP_182032768.1	pilin	Machinery gene
NI375_RS12450 (NI375_12650)	pilB	2738307..2739992 (+)	1686	WP_308386870.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI375_RS12455 (NI375_12655)	pilC	2740016..2741239 (+)	1224	WP_213867260.1	type II secretion system F family protein	Machinery gene
NI375_RS12460 (NI375_12660)	pilD	2741304..2742173 (+)	870	WP_012841418.1	A24 family peptidase	Machinery gene
NI375_RS12465 (NI375_12665)	coaE	2742174..2742788 (+)	615	WP_017635920.1	dephospho-CoA kinase	-
NI375_RS12470 (NI375_12670)	zapD	2742816..2743556 (+)	741	WP_005373086.1	cell division protein ZapD	-
NI375_RS12475 (NI375_12675)	yacG	2743715..2743909 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
NI375_RS12480 (NI375_12680)	rplS	2744565..2744918 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
NI375_RS12485 (NI375_12685)	trmD	2744960..2745721 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI375_RS12490 (NI375_12690)	rimM	2745749..2746297 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
NI375_RS12495 (NI375_12695)	rpsP	2746327..2746575 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=702935 NI375_RS12460 WP_012841418.1 2741304..2742173(+) (pilD) [Vibrio alginolyticus strain Isc15A]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=702935 NI375_RS12460 WP_012841418.1 2741304..2742173(+) (pilD) [Vibrio alginolyticus strain Isc15A]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAAACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464