Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NI390_RS00175 Genome accession   NZ_CP099915
Coordinates   38097..39212 (+) Length   371 a.a.
NCBI ID   WP_044364473.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33097..44212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS00155 (NI390_00155) rsmB 34030..35310 (-) 1281 WP_208563689.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NI390_RS00160 (NI390_00160) fmt 35361..36308 (-) 948 WP_024374491.1 methionyl-tRNA formyltransferase -
  NI390_RS00165 (NI390_00165) def 36327..36839 (-) 513 WP_020332568.1 peptide deformylase -
  NI390_RS00170 (NI390_00170) - 36979..38097 (+) 1119 WP_222777384.1 LysM peptidoglycan-binding domain-containing protein -
  NI390_RS00175 (NI390_00175) dprA 38097..39212 (+) 1116 WP_044364473.1 DNA-processing protein DprA Machinery gene
  NI390_RS00180 (NI390_00180) - 39215..39691 (+) 477 WP_020332565.1 DUF494 family protein -
  NI390_RS00185 (NI390_00185) - 39722..40309 (+) 588 WP_020332564.1 type I DNA topoisomerase -
  NI390_RS00190 (NI390_00190) - 40343..41476 (-) 1134 WP_308413286.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NI390_RS00195 (NI390_00195) purE 41480..41965 (-) 486 WP_308413287.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NI390_RS00200 (NI390_00200) - 42163..42720 (+) 558 WP_154183775.1 L-threonylcarbamoyladenylate synthase -
  NI390_RS00205 (NI390_00205) hemF 42740..43654 (+) 915 WP_308413288.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40499.96 Da        Isoelectric Point: 6.2298

>NTDB_id=702467 NI390_RS00175 WP_044364473.1 38097..39212(+) (dprA) [Vibrio fluvialis strain Isc7A]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSDQADNRHIL
TPFHAHYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFAAQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=702467 NI390_RS00175 WP_044364473.1 38097..39212(+) (dprA) [Vibrio fluvialis strain Isc7A]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACACTACAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGGCTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGATCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGCACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATCGTCGGCAGTCGCAACGCCAGTATCGACAGTCAACAAATCGCTCATCAGT
TTGCCGCGCAATTGGTCGAGCACGGCTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATAGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.42

100

0.644
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

45.968

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.407

98.113

0.426
  dprA Neisseria meningitidis MC58

37.437

100

0.402
  dprA Neisseria meningitidis strain C311

37.437

100

0.402
  dprA Acinetobacter baumannii strain A118

42.229

91.914

0.388
  dprA Neisseria gonorrhoeae MS11

35.93

100

0.385
  dprA Acinetobacter baumannii D1279779

42.183

91.375

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.443

100

0.377
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377
  dprA Haemophilus influenzae Rd KW20

48.551

74.394

0.361