Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PCP80_RS07625 Genome accession   NZ_CP115280
Coordinates   1634763..1635851 (+) Length   362 a.a.
NCBI ID   WP_073665414.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F010     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1629763..1640851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS07605 (PCP80_07620) rsmB 1630658..1631962 (-) 1305 WP_009316075.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP80_RS07610 (PCP80_07625) fmt 1631959..1632903 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP80_RS07615 (PCP80_07630) def 1632958..1633464 (-) 507 WP_003097293.1 peptide deformylase -
  PCP80_RS07620 (PCP80_07635) tsaP 1633603..1634628 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP80_RS07625 (PCP80_07640) dprA 1634763..1635851 (+) 1089 WP_073665414.1 DNA-processing protein DprA Machinery gene
  PCP80_RS07630 (PCP80_07645) - 1635892..1636449 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP80_RS07635 (PCP80_07650) - 1636459..1637436 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP80_RS07640 (PCP80_07655) hemF 1637627..1638544 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP80_RS07645 (PCP80_07660) aroE 1638602..1639426 (+) 825 WP_073665415.1 shikimate dehydrogenase -
  PCP80_RS07650 (PCP80_07665) - 1639537..1640523 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37720.27 Da        Isoelectric Point: 7.0288

>NTDB_id=701586 PCP80_RS07625 WP_073665414.1 1634763..1635851(+) (dprA) [Pseudomonas aeruginosa strain F010]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=701586 PCP80_RS07625 WP_073665414.1 1634763..1635851(+) (dprA) [Pseudomonas aeruginosa strain F010]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGT
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.09

97.79

0.412
  dprA Acinetobacter baumannii D1279779

38.462

100

0.387
  dprA Acinetobacter baumannii strain A118

39.093

97.514

0.381
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367