Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP80_RS07620 Genome accession   NZ_CP115280
Coordinates   1633603..1634628 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628603..1639628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS07595 (PCP80_07610) - 1628793..1629110 (-) 318 WP_073665413.1 tetratricopeptide repeat protein -
  PCP80_RS07600 (PCP80_07615) trkA 1629258..1630631 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  PCP80_RS07605 (PCP80_07620) rsmB 1630658..1631962 (-) 1305 WP_009316075.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP80_RS07610 (PCP80_07625) fmt 1631959..1632903 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP80_RS07615 (PCP80_07630) def 1632958..1633464 (-) 507 WP_003097293.1 peptide deformylase -
  PCP80_RS07620 (PCP80_07635) tsaP 1633603..1634628 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP80_RS07625 (PCP80_07640) dprA 1634763..1635851 (+) 1089 WP_073665414.1 DNA-processing protein DprA Machinery gene
  PCP80_RS07630 (PCP80_07645) - 1635892..1636449 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP80_RS07635 (PCP80_07650) - 1636459..1637436 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP80_RS07640 (PCP80_07655) hemF 1637627..1638544 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP80_RS07645 (PCP80_07660) aroE 1638602..1639426 (+) 825 WP_073665415.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=701585 PCP80_RS07620 WP_003097294.1 1633603..1634628(+) (tsaP) [Pseudomonas aeruginosa strain F010]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=701585 PCP80_RS07620 WP_003097294.1 1633603..1634628(+) (tsaP) [Pseudomonas aeruginosa strain F010]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393