Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PCP45_RS14320 Genome accession   NZ_CP115270
Coordinates   3019812..3020900 (+) Length   362 a.a.
NCBI ID   WP_023092225.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F019     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3014812..3025900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS14300 (PCP45_14305) rsmB 3015707..3017011 (-) 1305 WP_171892711.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP45_RS14305 (PCP45_14310) fmt 3017008..3017952 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP45_RS14310 (PCP45_14315) def 3018007..3018513 (-) 507 WP_003097293.1 peptide deformylase -
  PCP45_RS14315 (PCP45_14320) tsaP 3018652..3019677 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP45_RS14320 (PCP45_14325) dprA 3019812..3020900 (+) 1089 WP_023092225.1 DNA-processing protein DprA Machinery gene
  PCP45_RS14325 (PCP45_14330) - 3020941..3021498 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP45_RS14330 (PCP45_14335) - 3021508..3022485 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP45_RS14335 (PCP45_14340) hemF 3022676..3023593 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP45_RS14340 (PCP45_14345) aroE 3023651..3024475 (+) 825 WP_023098288.1 shikimate dehydrogenase -
  PCP45_RS14345 (PCP45_14350) - 3024586..3025572 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37731.25 Da        Isoelectric Point: 7.0742

>NTDB_id=700667 PCP45_RS14320 WP_023092225.1 3019812..3020900(+) (dprA) [Pseudomonas aeruginosa strain F019]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=700667 PCP45_RS14320 WP_023092225.1 3019812..3020900(+) (dprA) [Pseudomonas aeruginosa strain F019]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCACCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCACCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367