Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SA27298_RS08065 Genome accession   NZ_AP018548
Coordinates   1653042..1653437 (-) Length   131 a.a.
NCBI ID   WP_003028522.1    Uniprot ID   A0AAI9NIC2
Organism   Streptococcus anginosus strain CCUG 27928     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1648042..1658437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS08045 (SA27298_1641) - 1648491..1649777 (-) 1287 WP_026248189.1 extracellular solute-binding protein -
  SA27298_RS08050 (SA27298_1642) - 1649774..1650457 (-) 684 WP_003030916.1 response regulator transcription factor -
  SA27298_RS08055 (SA27298_1643) - 1650450..1651763 (-) 1314 WP_003030861.1 sensor histidine kinase -
  SA27298_RS08060 (SA27298_1644) - 1651763..1652749 (-) 987 WP_003030919.1 sugar ABC transporter substrate-binding protein -
  SA27298_RS08065 (SA27298_1645) ssbB/cilA 1653042..1653437 (-) 396 WP_003028522.1 single-stranded DNA-binding protein Machinery gene
  SA27298_RS08070 (SA27298_1646) ytpR 1653518..1654144 (-) 627 WP_003030886.1 YtpR family tRNA-binding protein -
  SA27298_RS08075 (SA27298_1647) - 1654161..1654478 (-) 318 WP_003030917.1 thioredoxin family protein -
  SA27298_RS08080 (SA27298_1648) - 1654475..1654762 (-) 288 WP_003030900.1 DUF4651 domain-containing protein -
  SA27298_RS08085 (SA27298_1649) pepA 1654882..1655946 (+) 1065 WP_003030888.1 glutamyl aminopeptidase -
  SA27298_RS08090 (SA27298_1650) - 1656009..1656569 (-) 561 WP_018543594.1 folate family ECF transporter S component -
  SA27298_RS08095 (SA27298_1651) - 1656747..1658051 (-) 1305 WP_003030856.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14671.59 Da        Isoelectric Point: 5.9381

>NTDB_id=69997 SA27298_RS08065 WP_003028522.1 1653042..1653437(-) (ssbB/cilA) [Streptococcus anginosus strain CCUG 27928]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLLLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=69997 SA27298_RS08065 WP_003028522.1 1653042..1653437(-) (ssbB/cilA) [Streptococcus anginosus strain CCUG 27928]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCGGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCCGAAACATTGGCAAGTTATGCAAGTAAAGGCAGCTTGATTTCACTAGACGGCGAACTTCGCACTCGC
CGTTATGAGAAAGACGGAGTGACGCATTATGTCACAGAAGTGCTTTGCAATGGTTTCCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCAGGTGCAGACTTGGCAGATTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment