Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PCP47_RS21820 Genome accession   NZ_CP115257
Coordinates   4727051..4727515 (-) Length   154 a.a.
NCBI ID   WP_003107295.1    Uniprot ID   Q59794
Organism   Pseudomonas aeruginosa strain F029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4722051..4732515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP47_RS21805 (PCP47_21795) nadC 4724572..4725420 (+) 849 WP_003104915.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PCP47_RS21815 (PCP47_21805) - 4725601..4726959 (-) 1359 WP_226342803.1 O-antigen ligase family protein -
  PCP47_RS21820 (PCP47_21810) pilA 4727051..4727515 (-) 465 WP_003107295.1 pilin Machinery gene
  PCP47_RS21825 (PCP47_21815) pilB 4727746..4729446 (+) 1701 WP_003107297.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCP47_RS21830 (PCP47_21820) pilC 4729450..4730667 (+) 1218 WP_003107299.1 type II secretion system F family protein Machinery gene
  PCP47_RS21835 (PCP47_21825) pilD 4730668..4731540 (+) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PCP47_RS21840 (PCP47_21830) coaE 4731537..4732148 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PCP47_RS21845 (PCP47_21835) yacG 4732145..4732345 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16316.75 Da        Isoelectric Point: 9.0066

>NTDB_id=699644 PCP47_RS21820 WP_003107295.1 4727051..4727515(-) (pilA) [Pseudomonas aeruginosa strain F029]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSTKTPNDTQYDIGFTE
STLLDLKGKEQIKVTDNKNGTVQLVATLGGSSGSAIKGAVITVSRDAQGVWSCNITKTPTAWKPNYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=699644 PCP47_RS21820 WP_003107295.1 4727051..4727515(-) (pilA) [Pseudomonas aeruginosa strain F029]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCTCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCACCAAGACTCCTAACGATACCCAGTATGACATTGGCTTTACTGAA
TCTACTTTGCTGGATCTCAAGGGTAAAGAGCAGATTAAAGTTACGGATAATAAAAATGGTACCGTGCAGCTAGTTGCTAC
TCTGGGTGGTTCTTCTGGTTCCGCCATCAAAGGAGCTGTCATCACTGTTTCGCGTGACGCTCAAGGAGTCTGGAGCTGCA
ATATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q59794

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

43.312

100

0.442
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.444

99.351

0.442
  pilA Acinetobacter baumannii strain A118

44.079

98.701

0.435
  comP Acinetobacter baylyi ADP1

38.415

100

0.409
  pilA Ralstonia pseudosolanacearum GMI1000

33.708

100

0.39
  pilA Vibrio parahaemolyticus RIMD 2210633

39.333

97.403

0.383
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.419

100

0.377
  pilA Vibrio cholerae strain A1552

36.129

100

0.364
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.129

100

0.364
  pilA Vibrio cholerae C6706

36.129

100

0.364
  pilE Neisseria gonorrhoeae MS11

41.791

87.013

0.364