Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PCP33_RS04705 Genome accession   NZ_CP115252
Coordinates   1033697..1034758 (+) Length   353 a.a.
NCBI ID   WP_328988215.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F034     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1028697..1039758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP33_RS04685 (PCP33_04690) rsmB 1029592..1030896 (-) 1305 WP_003122291.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP33_RS04690 (PCP33_04695) fmt 1030893..1031837 (-) 945 WP_017001989.1 methionyl-tRNA formyltransferase -
  PCP33_RS04695 (PCP33_04700) def 1031892..1032398 (-) 507 WP_003107059.1 peptide deformylase -
  PCP33_RS04700 (PCP33_04705) tsaP 1032537..1033562 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP33_RS04705 (PCP33_04710) dprA 1033697..1034758 (+) 1062 WP_328988215.1 DNA-processing protein DprA Machinery gene
  PCP33_RS04710 (PCP33_04715) - 1034799..1035356 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP33_RS04715 (PCP33_04720) - 1035366..1036343 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP33_RS04720 (PCP33_04725) hemF 1036534..1037451 (+) 918 WP_281005186.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP33_RS04725 (PCP33_04730) aroE 1037509..1038333 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  PCP33_RS04730 (PCP33_04735) - 1038444..1039430 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 36814.28 Da        Isoelectric Point: 7.2878

>NTDB_id=699112 PCP33_RS04705 WP_328988215.1 1033697..1034758(+) (dprA) [Pseudomonas aeruginosa strain F034]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLCRLYPRRHEALARRIVEGGGALVSELQLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQPLPHPLLALLRAAPYTSEGLAAA
SGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=699112 PCP33_RS04705 WP_328988215.1 1033697..1034758(+) (dprA) [Pseudomonas aeruginosa strain F034]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCTCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGACTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCATGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGTGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTTGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCAGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCCTACACCAGCGAAGGCCTGGCCGCCGCC
AGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGACGGCCGGGTCGCCTGCGAGGCCGGCAC
CTGGGTGCATCGTTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(298-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.45
  dprA Legionella pneumophila strain ERS1305867

42.817

100

0.431
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.345

95.184

0.422
  dprA Vibrio cholerae strain A1552

44.345

95.184

0.422
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.741

99.433

0.405
  dprA Glaesserella parasuis strain SC1401

43.161

93.201

0.402
  dprA Neisseria gonorrhoeae strain FA1090

43.894

85.836

0.377
  dprA Acinetobacter baumannii strain A118

37.607

99.433

0.374
  dprA Neisseria meningitidis MC58

45.361

82.436

0.374
  dprA Neisseria meningitidis strain C311

45.361

82.436

0.374
  dprA Neisseria gonorrhoeae MS11

43.564

85.836

0.374
  dprA Acinetobacter baylyi ADP1

47.253

77.337

0.365
  dprA Haemophilus influenzae Rd KW20

45.714

79.32

0.363