Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   NDN12_RS01485 Genome accession   NZ_CP098479
Coordinates   318246..318689 (+) Length   147 a.a.
NCBI ID   WP_251110577.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313246..323689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01465 (NDN12_01465) - 314530..315420 (+) 891 WP_251110574.1 metal-dependent hydrolase -
  NDN12_RS01470 (NDN12_01470) - 315593..316183 (+) 591 WP_033132630.1 LemA family protein -
  NDN12_RS01475 (NDN12_01475) - 316220..317278 (+) 1059 WP_251110575.1 TPM domain-containing protein -
  NDN12_RS01480 (NDN12_01480) - 317272..317832 (+) 561 WP_251110576.1 TPM domain-containing protein -
  NDN12_RS01485 (NDN12_01485) pilA2 318246..318689 (+) 444 WP_251110577.1 pilin Machinery gene
  NDN12_RS01490 (NDN12_01490) - 318744..320600 (+) 1857 WP_251110578.1 hypothetical protein -
  NDN12_RS01495 (NDN12_01495) - 320760..321188 (+) 429 WP_251110579.1 pilin -
  NDN12_RS01500 (NDN12_01500) - 321194..322816 (-) 1623 WP_251110580.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 14967.19 Da        Isoelectric Point: 8.9736

>NTDB_id=696102 NDN12_RS01485 WP_251110577.1 318246..318689(+) (pilA2) [Acinetobacter sp. C26G]
MKSMQKGFTLIELMIVVAIIGILAAIAIPAYQDYITRSQVTEAVTLGGGLKAPLSEYGADKNAWPTALVAPTVTPTTGQL
NATLGGKYAAVTTTIGGGYPSGTVTITMGTGKASGSTLLFTTADGGSTWSCNGGTIDAKYRPNACKN

Nucleotide


Download         Length: 444 bp        

>NTDB_id=696102 NDN12_RS01485 WP_251110577.1 318246..318689(+) (pilA2) [Acinetobacter sp. C26G]
ATGAAATCAATGCAAAAGGGTTTTACTCTTATCGAATTGATGATCGTTGTAGCGATCATTGGTATTTTGGCTGCGATTGC
GATCCCTGCTTATCAGGATTATATCACTCGTTCTCAAGTAACAGAGGCGGTAACATTAGGTGGTGGTCTTAAGGCTCCAT
TATCTGAATATGGTGCCGATAAAAATGCTTGGCCTACAGCTTTAGTTGCACCCACTGTTACCCCGACAACTGGTCAATTA
AATGCAACATTAGGTGGCAAATATGCCGCAGTAACGACAACGATTGGTGGAGGATACCCATCAGGTACTGTAACCATTAC
TATGGGTACTGGTAAAGCTTCTGGTAGCACCTTATTGTTCACTACGGCTGATGGTGGTTCAACATGGTCATGTAATGGTG
GAACAATCGATGCTAAATATCGCCCAAATGCATGTAAAAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-146)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

48

100

0.49
  pilA2 Legionella pneumophila strain ERS1305867

48

100

0.49
  pilA Ralstonia pseudosolanacearum GMI1000

39.535

100

0.463
  pilA/pilA1 Eikenella corrodens VA1

42.767

100

0.463
  comP Acinetobacter baylyi ADP1

44.667

100

0.456
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.046

100

0.442
  pilA Pseudomonas aeruginosa PAK

37.725

100

0.429
  pilE Neisseria gonorrhoeae MS11

37.5

100

0.408
  pilA Acinetobacter baumannii strain A118

40.141

96.599

0.388
  pilE Neisseria gonorrhoeae strain FA1090

34.756

100

0.388
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.948

100

0.374