Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NAF01_RS23590 Genome accession   NZ_CP098323
Coordinates   4719868..4720236 (-) Length   122 a.a.
NCBI ID   WP_250801348.1    Uniprot ID   -
Organism   Cytobacillus firmus strain PheN7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4714868..4725236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF01_RS23570 (NAF01_23570) - 4715704..4718523 (+) 2820 WP_197246531.1 DEAD/DEAH box helicase -
  NAF01_RS23575 (NAF01_23575) - 4718531..4718917 (-) 387 WP_163142372.1 hypothetical protein -
  NAF01_RS23580 (NAF01_23580) - 4719123..4719524 (+) 402 WP_163142370.1 helix-turn-helix transcriptional regulator -
  NAF01_RS23585 (NAF01_23585) - 4719671..4719862 (-) 192 WP_250802533.1 hypothetical protein -
  NAF01_RS23590 (NAF01_23590) ssbB 4719868..4720236 (-) 369 WP_250801348.1 single-stranded DNA-binding protein Machinery gene
  NAF01_RS23595 (NAF01_23595) - 4720502..4720960 (+) 459 WP_197217663.1 YwpF-like family protein -
  NAF01_RS23600 (NAF01_23600) - 4720980..4721270 (-) 291 WP_048007972.1 hypothetical protein -
  NAF01_RS23605 (NAF01_23605) fabZ 4721405..4721833 (-) 429 WP_048007971.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NAF01_RS23610 (NAF01_23610) - 4721958..4722227 (-) 270 WP_159346421.1 DNA-directed RNA polymerase subunit beta -
  NAF01_RS23615 (NAF01_23615) - 4722246..4723073 (-) 828 WP_250801351.1 flagellar hook-basal body protein -
  NAF01_RS23620 (NAF01_23620) - 4723108..4723947 (-) 840 WP_250801352.1 flagellar hook-basal body protein -
  NAF01_RS23625 (NAF01_23625) - 4724154..4725155 (-) 1002 WP_048007967.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14132.15 Da        Isoelectric Point: 9.7402

>NTDB_id=694926 NAF01_RS23590 WP_250801348.1 4719868..4720236(-) (ssbB) [Cytobacillus firmus strain PheN7]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKTAENTSQYCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDISVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=694926 NAF01_RS23590 WP_250801348.1 4719868..4720236(-) (ssbB) [Cytobacillus firmus strain PheN7]
ATGATCAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTGAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCAGAAGGGTGAAATCGATGCAGATTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAAAATACATCTCAGTATTGCCGGAAAGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTACGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAACGGAAGAA
GACAGAGGACATTTCGGTGACTGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

89.344

0.557
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.009

87.705

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

50

88.525

0.443
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

100

0.443
  ssbA Streptococcus mutans UA159

39.394

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.418
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

87.705

0.377