Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   M8C01_RS15830 Genome accession   NZ_CP097858
Coordinates   3429898..3431646 (-) Length   582 a.a.
NCBI ID   WP_045412013.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3424898..3436646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS15810 - 3425602..3426441 (-) 840 WP_009705524.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  M8C01_RS15815 - 3426511..3428004 (-) 1494 WP_264403871.1 SPOR domain-containing protein -
  M8C01_RS15820 aroB 3428058..3429158 (-) 1101 WP_005438436.1 3-dehydroquinate synthase -
  M8C01_RS15825 aroK 3429190..3429708 (-) 519 WP_005438434.1 shikimate kinase AroK -
  M8C01_RS15830 pilQ 3429898..3431646 (-) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  M8C01_RS15835 pilP 3431681..3432196 (-) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  M8C01_RS15840 pilO 3432186..3432779 (-) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  M8C01_RS15845 pilN 3432772..3433350 (-) 579 WP_264403872.1 PilN domain-containing protein Machinery gene
  M8C01_RS15850 pilM 3433334..3434350 (-) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63877.96 Da        Isoelectric Point: 4.5124

>NTDB_id=693124 M8C01_RS15830 WP_045412013.1 3429898..3431646(-) (pilQ) [Vibrio owensii strain GL-605]
MKMRQGLTLTPRKLAGIFSLWFFLLLAPFVAAQEVKSNSLKTIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESIEIFRDTSTTRLVAYIDEEYTHDYRLTGRYLEIKVGKIKANEKAPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGEDGGSSVGIDDFLNVNLAATSPNA
TSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=693124 M8C01_RS15830 WP_045412013.1 3429898..3431646(-) (pilQ) [Vibrio owensii strain GL-605]
ATGAAAATGAGACAAGGATTAACACTGACACCAAGGAAGCTAGCAGGGATCTTCTCTTTGTGGTTCTTTTTACTTTTAGC
CCCTTTTGTAGCAGCACAGGAAGTAAAGTCTAACTCGCTAAAGACCATCGACTTTCGCACAAACAAAGACAAAGATGCCG
TGATTGTTGTAGAACTTGCTTCTCCTGCAGCAATCGTTGATATCAAGCGCGTACAGGAAGGCTTGAGTATCGACTTACTC
AACACATCTGTAAAAGACGACCAGCTTTACCTTCTGGATGTAAAAGACTTTTCTACGGTCGTCGAGAGTATTGAAATATT
CCGAGATACCTCAACCACACGTTTAGTTGCTTATATTGATGAGGAATACACTCACGATTACCGCCTGACTGGACGTTACC
TAGAGATCAAAGTCGGTAAGATAAAAGCCAATGAAAAAGCGCCGGATAAGAGCATTCTAGAAAAAGAAGGGAAGCTGATT
TCAATTAACTTCCAAGACATTCCTGTGCGAAACGTATTGCAACTCATCGCCGACTACAACCAATTTAACTTAGTGGTATC
TGATTCCGTTGAAGGCAACTTAACTTTGCGTCTTGATGGTGTGCCTTGGCAGCAAGTGCTCGATATCATTCTTCAAGTAA
AAGGCTTGGATAAGCGTGTTGATGGCAATGTGATTTTGGTGGCGCCGAAAGACGAACTGGATTTGCGTGAAAAGCAACAA
TTAGAGAAACAGAAGCTTGAGCAGGAGATGGGTGAGCTTTCTTCTGAGATCATCAAAGTTAACTTCGCTAAAGCGTCGGA
CATTGCCGAGATGATTAATGGCGAGGGTAATATCAGTATGCTCTCAGAGCGTGGCAGCATGACCATTGATGAGCGGACAA
ACTCACTATTAATTAGAGAGCTACCAGAGAACATTGAGGTTATCCGAGAGATCATTGAGTCTTTGGATATTCCCGTCAAA
CAAGTTCAGATTGAAGCGCGAATTGTCACCATCAATGAAGGTAATATGGACGAACTTGGTGTGCGCTGGGGCTTTACTTC
TATCAACGGCAGCCACACCGTCGGTGGTTCGATTGAGAATAACCTTGCGACAATCGGCCTGTACGATGGCGGCGGTGATG
GCGAAGGTGAAGATGGTGGCAGCAGTGTTGGTATTGATGACTTCCTAAACGTGAATTTGGCTGCAACCAGTCCGAATGCG
ACCAGTCTTGCTTTCCAAGTTGCGAAGTTAGGCTCAGACACACTGCTTGATTTAGAGCTTTCTGCGCTGCAACAAGAATC
CAAGGCAGAGATTATTTCGAGCCCGCGATTGATTACCACTAACAAGAAGCCTGCTTATATCGAGCAAGGTACCGAAATCC
CGTACCTTGAGTCTTCTTCCAGTGGCGCAACGTCTGTCACGTTCAAAAAAGCCGTATTGAGCTTAAAAGTGACACCACAG
ATTACCCCTGACAATCGTTTAGTGTTGGATTTGAGCGTTACGCAAGATAGACCGGGTCAAGTTGTAAAAACAGGCACTGG
TGAAGCGGTCGCGATCGATACTCAACGCATTGGCACACAAGTTTTAGTCAATAACGGTGAAACGGTTGTGTTGGGTGGTA
TTTTTCAACATAGCATCACAAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCGCTGTTAGGGGCACTTTTTCGT
CGAAGTTATGAAAATGTCGGCAAAAGTGAACTGTTGATTTTTGTCACGCCTAAAGTTGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(422-580)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

95.876

100

0.959
  pilQ Vibrio cholerae strain A1552

76.761

97.595

0.749
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.761

97.595

0.749
  pilQ Pseudomonas aeruginosa PAK

40.522

98.797

0.4
  pilQ Legionella pneumophila strain ERS1305867

40.998

96.392

0.395
  pilQ Legionella pneumophila strain Lp02

40.998

96.392

0.395
  pilQ Acinetobacter baumannii D1279779

37.018

100

0.38
  pilQ Acinetobacter baumannii strain A118

37.018

100

0.38
  comQ Acinetobacter baylyi ADP1

37.177

99.828

0.371