Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   M8C01_RS15625 Genome accession   NZ_CP097858
Coordinates   3380830..3381474 (+) Length   214 a.a.
NCBI ID   WP_005438104.1    Uniprot ID   A0A0C1W6X8
Organism   Vibrio owensii strain GL-605     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3375830..3386474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS15610 - 3376282..3377730 (-) 1449 WP_045482388.1 MSHA biogenesis protein MshI -
  M8C01_RS15615 csrD 3377720..3379750 (-) 2031 WP_264403862.1 RNase E specificity factor CsrD -
  M8C01_RS15620 ssb 3379998..3380537 (-) 540 WP_180824472.1 single-stranded DNA-binding protein Machinery gene
  M8C01_RS15625 qstR 3380830..3381474 (+) 645 WP_005438104.1 LuxR C-terminal-related transcriptional regulator Regulator
  M8C01_RS15630 galU 3381637..3382509 (+) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M8C01_RS15635 uvrA 3382648..3385470 (+) 2823 WP_264403863.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24566.44 Da        Isoelectric Point: 9.2283

>NTDB_id=693123 M8C01_RS15625 WP_005438104.1 3380830..3381474(+) (qstR) [Vibrio owensii strain GL-605]
MKKSAYARKLFLISMEDDAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=693123 M8C01_RS15625 WP_005438104.1 3380830..3381474(+) (qstR) [Vibrio owensii strain GL-605]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGATGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TATTGATCGACTTTAGTGAACACAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTGCCTAAGCGTTTGACTACGGATGAATTACTCACATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGTCAAAACTGGTTGCCTCGTAATGTGACTAGCC
AACTCCTGCATTATTATCGCAATGTCATCAGTACCCACACAGCACCAGCCACCGTCGATTTGACCATTCGTGAGCTGCAA
GTCTTACGCTGCCTTCAAGCGGGTGCCTCAAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTACCAAATTTTTAAGAAGCTCTCAGTGAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1W6X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

96.262

100

0.963
  qstR Vibrio parahaemolyticus RIMD 2210633

90.187

100

0.902
  qstR Vibrio cholerae strain A1552

52.804

100

0.528