Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8C01_RS15620 Genome accession   NZ_CP097858
Coordinates   3379998..3380537 (-) Length   179 a.a.
NCBI ID   WP_180824472.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3374998..3385537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS15600 - 3375313..3375642 (-) 330 WP_264403861.1 MSHA biogenesis protein MshK -
  M8C01_RS15605 gspM 3375635..3376285 (-) 651 WP_045411472.1 type II secretion system protein GspM -
  M8C01_RS15610 - 3376282..3377730 (-) 1449 WP_045482388.1 MSHA biogenesis protein MshI -
  M8C01_RS15615 csrD 3377720..3379750 (-) 2031 WP_264403862.1 RNase E specificity factor CsrD -
  M8C01_RS15620 ssb 3379998..3380537 (-) 540 WP_180824472.1 single-stranded DNA-binding protein Machinery gene
  M8C01_RS15625 qstR 3380830..3381474 (+) 645 WP_005438104.1 LuxR C-terminal-related transcriptional regulator Regulator
  M8C01_RS15630 galU 3381637..3382509 (+) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M8C01_RS15635 uvrA 3382648..3385470 (+) 2823 WP_264403863.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19888.94 Da        Isoelectric Point: 4.9269

>NTDB_id=693122 M8C01_RS15620 WP_180824472.1 3379998..3380537(-) (ssb) [Vibrio owensii strain GL-605]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=693122 M8C01_RS15620 WP_180824472.1 3379998..3380537(-) (ssb) [Vibrio owensii strain GL-605]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGCAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCGCAACAGCAACAAC
AAGGTGGTTGGGGGCAGCCTCAACAGCCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.663

100

0.816
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.603
  ssb Neisseria meningitidis MC58

47.514

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.48