Detailed information NTG0692921

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: M9H69_RS03210
• Genome accession: NZ_CP097843
• Coordinates: 592416..592886 (+)
• Length: 156 a.a.
• NCBI ID: WP_000609613.1
• Uniprot ID: A0A1X0WT85
• Organism: Streptococcus oralis strain HP01
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	593638..594521	592416..592886	flank	752

Gene organization within MGE regions

Location: 592416..594521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9H69_RS03210 (M9H69_03210)	ssbA	592416..592886 (+)	471	WP_000609613.1	single-stranded DNA-binding protein	Machinery gene
M9H69_RS03215 (M9H69_03215)	rpsR	592918..593157 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
M9H69_RS03220 (M9H69_03220)	-	593404..594521 (-)	1118	Protein_583	IS3 family transposase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17158.01 Da
• Isoelectric Point: 5.1957

>NTDB_id=692921 M9H69_RS03210 WP_000609613.1 592416..592886(+) (ssbA) [Streptococcus oralis strain HP01]
MINNVVLVGRMTRDAELRYTSSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVADNFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=692921 M9H69_RS03210 WP_000609613.1 592416..592886(+) (ssbA) [Streptococcus oralis strain HP01]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACGCGTGACGCTGAGTTGCGTTATACCTCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAAGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATTCAGACTCGA
AGTTACGATAACCAGCAAGGACAACGTGTTTACGTAACAGAAGTCGTGGCGGATAATTTCCAAATGTTGGAAAGTCGCGG
AGTGCGCGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGTCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACAAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A1X0WT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.07	100	0.596
ssb	Latilactobacillus sakei subsp. sakei 23K	53.448	100	0.596
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.604	67.949	0.385
ssb	Neisseria gonorrhoeae MS11	34.091	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.211	69.872	0.372
ssb	Neisseria meningitidis MC58	32.571	100	0.365