Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   M9H69_RS02165 Genome accession   NZ_CP097843
Coordinates   403158..403553 (+) Length   131 a.a.
NCBI ID   WP_250315794.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398158..408553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS02135 (M9H69_02135) rpoE 398330..398920 (+) 591 WP_000418415.1 DNA-directed RNA polymerase subunit delta -
  M9H69_RS02140 (M9H69_02140) - 399238..400845 (+) 1608 WP_250315790.1 CTP synthase -
  M9H69_RS02145 (M9H69_02145) - 401023..401322 (+) 300 WP_009755236.1 DUF4651 domain-containing protein -
  M9H69_RS02150 (M9H69_02150) - 401319..401636 (+) 318 WP_250315791.1 thioredoxin family protein -
  M9H69_RS02155 (M9H69_02155) ytpR 401652..402278 (+) 627 WP_250315792.1 YtpR family tRNA-binding protein -
  M9H69_RS02160 (M9H69_02160) - 402320..403081 (+) 762 WP_250315793.1 SDR family NAD(P)-dependent oxidoreductase -
  M9H69_RS02165 (M9H69_02165) ssbB/cilA 403158..403553 (+) 396 WP_250315794.1 single-stranded DNA-binding protein Machinery gene
  M9H69_RS02170 (M9H69_02170) groES 403862..404146 (+) 285 WP_000917328.1 co-chaperone GroES -
  M9H69_RS02175 (M9H69_02175) groL 404162..405784 (+) 1623 WP_084938825.1 chaperonin GroEL -
  M9H69_RS02180 (M9H69_02180) - 405922..406689 (+) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  M9H69_RS02185 (M9H69_02185) - 406760..407293 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  M9H69_RS02190 (M9H69_02190) recX 407382..408158 (-) 777 WP_250315795.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14907.85 Da        Isoelectric Point: 5.9409

>NTDB_id=692917 M9H69_RS02165 WP_250315794.1 403158..403553(+) (ssbB/cilA) [Streptococcus oralis strain HP01]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFERNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=692917 M9H69_RS02165 WP_250315794.1 403158..403553(+) (ssbB/cilA) [Streptococcus oralis strain HP01]
ATGTATAATAAAGTTATCATGATTGGGCGTTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGCGCAACGATCGCTGTGAACCGTCGTTACAAAGACCAGAATGGGGAACGCGAAGCTGATTTTGTCAATCTTGTTCTTT
GGGGAAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAGAAATGGCCAGATGAACTATGTGACTGAAGTTCTTGTGACAGGATTCCAACTTTTGGAAAGTCGTGCCCA
ACGAGCCATGCGTGAAAATAATGCCGGACAGGATTTGGCAGATTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366