Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M9H69_RS00215 Genome accession   NZ_CP097843
Coordinates   33210..33602 (+) Length   130 a.a.
NCBI ID   WP_007518739.1    Uniprot ID   A0A4V0BNW3
Organism   Streptococcus oralis strain HP01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 12173..68268 33210..33602 within 0


Gene organization within MGE regions


Location: 12173..68268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS00060 (M9H69_00060) ftsH 12173..14131 (+) 1959 WP_084874658.1 ATP-dependent zinc metalloprotease FtsH -
  M9H69_RS00065 (M9H69_00065) - 14186..14431 (+) 246 Protein_13 23S rRNA (uracil-5-)-methyltransferase RumA -
  M9H69_RS00100 (M9H69_00100) - 19915..20850 (+) 936 WP_009729550.1 IS30 family transposase -
  M9H69_RS00105 (M9H69_00105) comW 21053..21289 (+) 237 WP_000939506.1 sigma(X)-activator ComW -
  M9H69_RS00110 (M9H69_00110) - 21532..22818 (+) 1287 WP_195217196.1 adenylosuccinate synthase -
  M9H69_RS00115 (M9H69_00115) tadA 23019..23486 (+) 468 WP_250315586.1 tRNA adenosine(34) deaminase TadA -
  M9H69_RS00125 (M9H69_00125) - 23695..24831 (-) 1137 WP_250315587.1 site-specific integrase -
  M9H69_RS00130 (M9H69_00130) - 24956..25627 (-) 672 WP_250315588.1 zinc ribbon domain-containing protein -
  M9H69_RS00135 (M9H69_00135) - 25760..26518 (-) 759 WP_250315589.1 ImmA/IrrE family metallo-endopeptidase -
  M9H69_RS00140 (M9H69_00140) - 26521..26904 (-) 384 WP_007518712.1 helix-turn-helix transcriptional regulator -
  M9H69_RS00145 (M9H69_00145) - 27202..27393 (+) 192 WP_001112860.1 DNA-binding protein -
  M9H69_RS00150 (M9H69_00150) - 27468..27740 (+) 273 WP_007518714.1 hypothetical protein -
  M9H69_RS00155 (M9H69_00155) - 27737..27910 (+) 174 WP_250315590.1 hypothetical protein -
  M9H69_RS00160 (M9H69_00160) - 27915..28172 (+) 258 WP_250315591.1 hypothetical protein -
  M9H69_RS00165 (M9H69_00165) - 28183..28461 (+) 279 WP_250315592.1 hypothetical protein -
  M9H69_RS00170 (M9H69_00170) - 28463..28693 (+) 231 WP_000252079.1 hypothetical protein -
  M9H69_RS00175 (M9H69_00175) - 28707..29429 (+) 723 WP_250315593.1 HNH endonuclease signature motif containing protein -
  M9H69_RS00180 (M9H69_00180) - 29422..29904 (+) 483 WP_250315594.1 siphovirus Gp157 family protein -
  M9H69_RS00185 (M9H69_00185) - 29913..30263 (+) 351 WP_224757118.1 hypothetical protein -
  M9H69_RS00190 (M9H69_00190) - 30263..30727 (+) 465 WP_049493537.1 hypothetical protein -
  M9H69_RS00195 (M9H69_00195) - 30696..31871 (+) 1176 WP_250315595.1 DEAD/DEAH box helicase family protein -
  M9H69_RS00200 (M9H69_00200) - 31883..32197 (+) 315 WP_250315596.1 hypothetical protein -
  M9H69_RS00205 (M9H69_00205) - 32210..32920 (+) 711 WP_250315597.1 ERF family protein -
  M9H69_RS00210 (M9H69_00210) - 32920..33210 (+) 291 WP_007518737.1 hypothetical protein -
  M9H69_RS00215 (M9H69_00215) ssbA 33210..33602 (+) 393 WP_007518739.1 single-stranded DNA-binding protein Machinery gene
  M9H69_RS00220 (M9H69_00220) - 33614..34441 (+) 828 WP_007518741.1 bifunctional DNA primase/polymerase -
  M9H69_RS00225 (M9H69_00225) - 34425..35825 (+) 1401 WP_250315598.1 virulence-associated E family protein -
  M9H69_RS00230 (M9H69_00230) - 36205..36357 (+) 153 WP_007518745.1 hypothetical protein -
  M9H69_RS00235 (M9H69_00235) - 36357..36617 (+) 261 WP_007518746.1 hypothetical protein -
  M9H69_RS00240 (M9H69_00240) - 36614..36766 (+) 153 WP_250315599.1 hypothetical protein -
  M9H69_RS00245 (M9H69_00245) - 36779..37018 (+) 240 WP_250315600.1 DUF1372 family protein -
  M9H69_RS00250 (M9H69_00250) - 37015..37515 (+) 501 WP_250315601.1 MazG-like family protein -
  M9H69_RS00255 (M9H69_00255) - 37517..37795 (+) 279 WP_007518749.1 hypothetical protein -
  M9H69_RS00260 (M9H69_00260) - 38208..38633 (+) 426 WP_250315602.1 DUF1492 domain-containing protein -
  M9H69_RS00265 (M9H69_00265) - 38722..39249 (+) 528 WP_250315603.1 terminase small subunit -
  M9H69_RS00270 (M9H69_00270) - 39233..40573 (+) 1341 WP_250315604.1 terminase -
  M9H69_RS00275 (M9H69_00275) - 40584..42143 (+) 1560 WP_250315605.1 capsid protein -
  M9H69_RS00280 (M9H69_00280) - 42100..42288 (+) 189 WP_007518758.1 hypothetical protein -
  M9H69_RS00285 (M9H69_00285) - 42278..44047 (+) 1770 WP_250315606.1 phage minor capsid protein -
  M9H69_RS00290 (M9H69_00290) - 44050..44307 (+) 258 WP_007518762.1 hypothetical protein -
  M9H69_RS00295 (M9H69_00295) - 44361..44612 (+) 252 WP_007518764.1 hypothetical protein -
  M9H69_RS00300 (M9H69_00300) - 44614..44865 (+) 252 WP_250315607.1 DUF6275 family protein -
  M9H69_RS00305 (M9H69_00305) - 45080..45670 (+) 591 WP_250315608.1 hypothetical protein -
  M9H69_RS00310 (M9H69_00310) - 45690..46589 (+) 900 WP_250315609.1 capsid protein -
  M9H69_RS00315 (M9H69_00315) - 46608..46823 (+) 216 WP_250315610.1 hypothetical protein -
  M9H69_RS00320 (M9H69_00320) - 46829..47203 (+) 375 WP_007518773.1 hypothetical protein -
  M9H69_RS00325 (M9H69_00325) - 47203..47541 (+) 339 WP_138099583.1 hypothetical protein -
  M9H69_RS00330 (M9H69_00330) - 47546..47926 (+) 381 WP_138099584.1 hypothetical protein -
  M9H69_RS00335 (M9H69_00335) - 47929..48333 (+) 405 WP_250315611.1 minor capsid protein -
  M9H69_RS00340 (M9H69_00340) - 48333..48776 (+) 444 WP_007518781.1 hypothetical protein -
  M9H69_RS00345 (M9H69_00345) - 48818..49015 (+) 198 WP_195217141.1 hypothetical protein -
  M9H69_RS00350 (M9H69_00350) - 49015..49317 (+) 303 WP_250315612.1 hypothetical protein -
  M9H69_RS00355 (M9H69_00355) - 49352..49645 (+) 294 WP_029680951.1 Gp15 family bacteriophage protein -
  M9H69_RS00360 (M9H69_00360) - 49659..52835 (+) 3177 WP_250315613.1 hypothetical protein -
  M9H69_RS00365 (M9H69_00365) - 52845..53186 (+) 342 WP_049479251.1 hypothetical protein -
  M9H69_RS00370 (M9H69_00370) - 53195..55930 (+) 2736 WP_250315614.1 collagen-like protein -
  M9H69_RS00375 (M9H69_00375) - 55941..57989 (+) 2049 WP_250315615.1 DUF859 family phage minor structural protein -
  M9H69_RS00380 (M9H69_00380) - 57999..58604 (+) 606 WP_250315616.1 DUF1366 domain-containing protein -
  M9H69_RS00385 (M9H69_00385) - 58616..58915 (+) 300 WP_001810279.1 hypothetical protein -
  M9H69_RS00390 (M9H69_00390) - 58919..59251 (+) 333 WP_061864867.1 phage holin -
  M9H69_RS00395 (M9H69_00395) - 59254..60219 (+) 966 WP_250315617.1 N-acetylmuramoyl-L-alanine amidase family protein -
  M9H69_RS00400 (M9H69_00400) - 60504..60947 (+) 444 WP_250315618.1 dUTP diphosphatase -
  M9H69_RS00405 (M9H69_00405) - 60949..61464 (+) 516 WP_250315619.1 histidine phosphatase family protein -
  M9H69_RS00410 (M9H69_00410) radA 61475..62839 (+) 1365 WP_284453902.1 DNA repair protein RadA Machinery gene
  M9H69_RS00415 (M9H69_00415) - 62912..63406 (+) 495 WP_002876632.1 carbonic anhydrase -
  M9H69_RS00420 (M9H69_00420) - 63620..64588 (+) 969 WP_000010175.1 ribose-phosphate diphosphokinase -
  M9H69_RS00425 (M9H69_00425) - 64708..65145 (+) 438 WP_250315621.1 CoA-binding protein -
  M9H69_RS00430 (M9H69_00430) - 65173..66183 (-) 1011 WP_250315622.1 YeiH family protein -
  M9H69_RS00435 (M9H69_00435) - 66332..67501 (+) 1170 WP_000366366.1 pyridoxal phosphate-dependent aminotransferase -
  M9H69_RS00440 (M9H69_00440) recO 67498..68268 (+) 771 WP_084938702.1 DNA repair protein RecO -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14825.44 Da        Isoelectric Point: 4.6460

>NTDB_id=692892 M9H69_RS00215 WP_007518739.1 33210..33602(+) (ssbA) [Streptococcus oralis strain HP01]
MINNAVLVGRMTRDAELRYTPQNVAVATFTLAVNRTFKSQNGEREADFINCVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRNQQSSNDTFGNDNPMDIQDDDLPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=692892 M9H69_RS00215 WP_007518739.1 33210..33602(+) (ssbA) [Streptococcus oralis strain HP01]
ATGATTAACAATGCTGTACTTGTAGGGCGCATGACCCGTGATGCTGAACTCCGCTATACACCGCAAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGCGAGGCTGACTTTATCAACTGCGTTATGT
GGCGCCAACAAGCCGAAAATCTTGCAAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGCCGTATTCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGTCGTAA
TCAACAAAGTTCGAATGATACATTTGGGAATGACAACCCGATGGATATTCAAGACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0BNW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.723
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.677
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.212

100

0.469
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.212

100

0.469
  ssbB/cilA Streptococcus pneumoniae Rx1

45.455

100

0.462
  ssbB/cilA Streptococcus mitis NCTC 12261

45.455

100

0.462
  ssbB/cilA Streptococcus pneumoniae D39

45.455

100

0.462
  ssbB/cilA Streptococcus pneumoniae R6

45.455

100

0.462
  ssbB/cilA Streptococcus mitis SK321

45.455

100

0.462
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.097

86.923

0.462
  ssbA Streptococcus mutans UA159

41.667

100

0.423
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

80.769

0.377