Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   STO1_RS07790 Genome accession   NZ_AP018338
Coordinates   1511017..1511412 (-) Length   131 a.a.
NCBI ID   WP_000282461.1    Uniprot ID   A0A1X1GNR2
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1508786..1519609 1511017..1511412 within 0


Gene organization within MGE regions


Location: 1508786..1519609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS07780 (STO1_014910) groL 1508786..1510408 (-) 1623 WP_096422709.1 chaperonin GroEL -
  STO1_RS07785 (STO1_014920) groES 1510424..1510708 (-) 285 WP_000917326.1 co-chaperone GroES -
  STO1_RS07790 (STO1_014930) ssbB/cilA 1511017..1511412 (-) 396 WP_000282461.1 single-stranded DNA-binding protein Machinery gene
  STO1_RS07795 (STO1_014940) - 1511490..1512251 (-) 762 WP_096422711.1 SDR family NAD(P)-dependent oxidoreductase -
  STO1_RS07800 (STO1_014950) ytpR 1512293..1512919 (-) 627 WP_096422713.1 YtpR family tRNA-binding protein -
  STO1_RS07805 (STO1_014960) - 1512935..1513252 (-) 318 WP_096422715.1 thioredoxin family protein -
  STO1_RS07810 (STO1_014970) - 1513249..1513548 (-) 300 WP_084880108.1 DUF4651 domain-containing protein -
  STO1_RS07815 (STO1_014980) - 1513734..1514807 (-) 1074 WP_172843651.1 N-acetylmuramoyl-L-alanine amidase family protein -
  STO1_RS07820 (STO1_014990) - 1514926..1516533 (-) 1608 WP_096422717.1 CTP synthase -
  STO1_RS07825 (STO1_015000) rpoE 1516860..1517450 (-) 591 WP_000418417.1 DNA-directed RNA polymerase subunit delta -
  STO1_RS07835 (STO1_015010) - 1517734..1519029 (-) 1296 WP_096422719.1 FRG domain-containing protein -
  STO1_RS07840 (STO1_015020) - 1519034..1519609 (-) 576 WP_096422721.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14879.84 Da        Isoelectric Point: 5.9409

>NTDB_id=69073 STO1_RS07790 WP_000282461.1 1511017..1511412(-) (ssbB/cilA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=69073 STO1_RS07790 WP_000282461.1 1511017..1511412(-) (ssbB/cilA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGTATAATAAAGTTATCATGATCGGGCGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCGACTATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAACGTGAAGCTGATTTTGTCAATTTGGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATATCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTTCTTGTGACAGGATTCCAACTTTTGGAAAGTCGTGCCCA
ACGAGCCATGCGTGAAAATAATGCCGGACAGGATTTGGCAGATTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GNR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment