Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M4S28_RS01125 Genome accession   NZ_CP097293
Coordinates   238443..239555 (-) Length   370 a.a.
NCBI ID   WP_249632163.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 233443..244555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS01095 (M4S28_01095) hemF 233981..234898 (-) 918 WP_249632159.1 oxygen-dependent coproporphyrinogen oxidase -
  M4S28_RS01100 (M4S28_01100) - 234918..235475 (-) 558 WP_249632160.1 L-threonylcarbamoyladenylate synthase -
  M4S28_RS01105 (M4S28_01105) purE 235671..236156 (+) 486 WP_102491186.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M4S28_RS01110 (M4S28_01110) - 236162..237292 (+) 1131 WP_249632161.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M4S28_RS01115 (M4S28_01115) - 237381..237950 (-) 570 WP_249632162.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  M4S28_RS01120 (M4S28_01120) - 237963..238439 (-) 477 WP_004735774.1 DUF494 family protein -
  M4S28_RS01125 (M4S28_01125) dprA 238443..239555 (-) 1113 WP_249632163.1 DNA-processing protein DprA Machinery gene
  M4S28_RS01130 (M4S28_01130) - 239552..240643 (-) 1092 WP_249632164.1 LysM peptidoglycan-binding domain-containing protein -
  M4S28_RS01135 (M4S28_01135) def 240784..241296 (+) 513 WP_004735769.1 peptide deformylase -
  M4S28_RS01140 (M4S28_01140) fmt 241335..242300 (+) 966 WP_054548305.1 methionyl-tRNA formyltransferase -
  M4S28_RS01145 (M4S28_01145) rsmB 242420..243700 (+) 1281 WP_017077320.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40171.87 Da        Isoelectric Point: 6.7205

>NTDB_id=688305 M4S28_RS01125 WP_249632163.1 238443..239555(-) (dprA) [Vibrio sp. J383]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVDYSSQQLQALGLSAKQITYLREQAPREVEACLEWQARQPNHHII
TPNCSHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPSMGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=688305 M4S28_RS01125 WP_249632163.1 238443..239555(-) (dprA) [Vibrio sp. J383]
GTGAATGAACAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGCATTGATTCCCCTTCGAATATTGTTGATTACTCAAGTCAGCAACTGCAAGCGCTTGGTTTGTCTGCCAAGCAAATTA
CCTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCCTAGAGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACCCCGAATTGCTCGCATTATCCCAAACTGCTGAATGAGACCGCCTCCGCGCCAAGCGTGCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGTAATGCCAGTCTCGAAGGGTTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTATTGGGTTCGGGTTTGGATTCAATTTATCCTGCGCGACACAGAAATTT
AGCCGATAGGATCTGTGAAAATGGCGCATTGATTTCAGAGTTTCGCCCAAGTGCCAAACCACGACCTGAACATTTCCCTC
GCCGTAACCGTATAATAAGTGGGTTATCGCTCGGAACCTTGGTGGTTGAAGCGGCTGAGAAAAGTGGTTCTTTGATTACA
GCTCGTTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCTGGCTCTATTCATAACCCAACCAGTCGAGGAGGTAA
TAGCTTAATCAAAGCTGGAGCATGTTTGGTACAGAGTGCACAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATCGATCAGCAACCCAGCTTGTTCGAACCTACGCCCAGTATGGGGGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

58.556

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.581

100

0.478
  dprA Neisseria meningitidis MC58

38.791

100

0.416
  dprA Neisseria meningitidis strain C311

38.791

100

0.416
  dprA Legionella pneumophila strain ERS1305867

46.341

88.649

0.411
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.403
  dprA Neisseria gonorrhoeae strain FA1090

37.722

100

0.403
  dprA Acinetobacter baumannii D1279779

41.108

92.703

0.381
  dprA Acinetobacter baumannii strain A118

41.003

91.622

0.376
  dprA Acinetobacter baylyi ADP1

39.193

93.784

0.368