Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M4X66_RS00905 Genome accession   NZ_CP097286
Coordinates   200742..201959 (-) Length   405 a.a.
NCBI ID   WP_249583477.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195742..206959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS00870 - 196729..196902 (-) 174 WP_004884089.1 DUF3094 family protein -
  M4X66_RS00875 - 196916..197461 (-) 546 WP_043305100.1 MOSC domain-containing protein -
  M4X66_RS00880 - 197458..198087 (-) 630 WP_004884092.1 DUF1780 domain-containing protein -
  M4X66_RS00885 - 198212..198673 (+) 462 WP_249583475.1 hypothetical protein -
  M4X66_RS00890 yacG 199042..199251 (-) 210 WP_122439230.1 DNA gyrase inhibitor YacG -
  M4X66_RS00895 coaE 199248..199871 (-) 624 WP_249583476.1 dephospho-CoA kinase -
  M4X66_RS00900 pilD 199868..200740 (-) 873 WP_192020739.1 A24 family peptidase Machinery gene
  M4X66_RS00905 pilC 200742..201959 (-) 1218 WP_249583477.1 type II secretion system F family protein Machinery gene
  M4X66_RS00910 pilB 201962..203662 (-) 1701 WP_249583478.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M4X66_RS00915 pilA2 203888..204325 (+) 438 WP_249583479.1 pilin Machinery gene
  M4X66_RS00920 - 205071..205637 (-) 567 WP_249583480.1 recombinase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43892.66 Da        Isoelectric Point: 10.2256

>NTDB_id=688254 M4X66_RS00905 WP_249583477.1 200742..201959(-) (pilC) [Pseudomonas viridiflava strain JACO-C-5]
MASKAVKVSVFTWEGVDKKGSKISGELSGHNPALIKAQLRKQGINPTKVRKKTVSIFGKGKKIKPLDIAFFARQMATMMK
AGVPLLQSFDIISEGAENPNMRSLVDSLKQEVSAGNSFATALRQKPDQFDNLFCNLVDAGEQAGALESLLDRVATYKEKT
EKLKAKIKKAMTYPAAVLVVAFIVSGILLIKVVPQFQAVFAGFGAELPAFTRMVIGLSEVVQTWWLAIIGGFVGSFFIFK
RSYKQSQKFRDSVDRFLLKIPLIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVMKIKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFQ
LGAAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=688254 M4X66_RS00905 WP_249583477.1 200742..201959(-) (pilC) [Pseudomonas viridiflava strain JACO-C-5]
ATGGCCAGTAAAGCAGTCAAAGTCAGTGTTTTCACCTGGGAAGGCGTAGACAAGAAAGGCAGCAAGATCAGCGGCGAGTT
GAGTGGCCACAATCCGGCGCTGATCAAAGCTCAACTTCGTAAGCAGGGCATCAACCCGACCAAAGTGCGGAAGAAAACGG
TCTCGATCTTCGGCAAGGGTAAAAAGATCAAGCCGCTGGACATCGCTTTTTTTGCTCGGCAGATGGCGACCATGATGAAA
GCGGGCGTTCCGCTTTTACAATCTTTCGACATTATCAGCGAGGGAGCGGAGAACCCGAACATGCGCTCGCTCGTGGATTC
TCTTAAACAGGAAGTATCCGCTGGTAACAGTTTTGCAACGGCGTTGAGGCAAAAGCCCGACCAATTCGACAATTTATTCT
GCAATCTGGTGGACGCAGGCGAACAGGCAGGTGCTCTTGAAAGCTTGTTGGACCGGGTAGCGACTTATAAGGAAAAAACC
GAAAAGCTCAAAGCCAAGATCAAGAAAGCCATGACTTATCCCGCGGCAGTTCTGGTTGTGGCGTTTATCGTCTCCGGGAT
TCTGCTCATCAAAGTGGTGCCGCAATTTCAGGCAGTTTTTGCCGGTTTTGGGGCCGAGTTACCTGCTTTTACACGAATGG
TCATCGGTCTTTCCGAAGTGGTCCAAACCTGGTGGCTGGCCATTATCGGGGGATTTGTCGGCAGCTTTTTCATATTCAAG
CGAAGCTACAAACAGTCACAGAAATTTCGCGACAGTGTTGACAGGTTTCTGTTGAAGATTCCGCTGATTGGTCCGTTGAT
CTTCAAGTCGTCAGTCGCTCGCTATGCTCGCACGCTGGCCACGACCTTTGCGGCGGGTGTTCCCTTGGTCGAAGCACTGG
ATTCCGTGGCAGGGGCTACAGGTAATGTCGTGTTCAGAAATGCAGTGATGAAAATCAAGCAAGATGTGTCCACGGGGATG
CAGCTGAATTTCTCAATGCGCTCCACCGGTGTATTTCCAAGCCTTGCTATCCAGATGACCGCCATCGGTGAAGAGTCTGG
TGCCCTGGATAGCATGCTCGATAAGGTCGCGACCTATTACGAAGATGAAGTCGATAACATGGTCGACAGCCTGACCAGCC
TTATGGAACCGATGATCATGGCCGTGCTTGGGGTTATCGTGGGAGGGCTGGTCATTGCCATGTACCTGCCGATTTTCCAG
TTGGGAGCTGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.309

100

0.753
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Acinetobacter baylyi ADP1

59.611

100

0.605
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria meningitidis 44/76-A

42.716

100

0.427
  pilG Neisseria gonorrhoeae MS11

42.716

100

0.427
  pilC Vibrio campbellii strain DS40M4

41.032

100

0.412
  pilC Vibrio cholerae strain A1552

40.648

99.012

0.402
  pilC Thermus thermophilus HB27

38.404

99.012

0.38