NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	M4X66_RS00900	Genome accession	NZ_CP097286
Coordinates	199868..200740 (-)	Length	290 a.a.
NCBI ID	WP_192020739.1	Uniprot ID	-
Organism	Pseudomonas viridiflava strain JACO-C-5
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 194868..205740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4X66_RS00865	-	195367..196665 (-)	1299	WP_004884087.1	NAD(P)/FAD-dependent oxidoreductase	-
M4X66_RS00870	-	196729..196902 (-)	174	WP_004884089.1	DUF3094 family protein	-
M4X66_RS00875	-	196916..197461 (-)	546	WP_043305100.1	MOSC domain-containing protein	-
M4X66_RS00880	-	197458..198087 (-)	630	WP_004884092.1	DUF1780 domain-containing protein	-
M4X66_RS00885	-	198212..198673 (+)	462	WP_249583475.1	hypothetical protein	-
M4X66_RS00890	yacG	199042..199251 (-)	210	WP_122439230.1	DNA gyrase inhibitor YacG	-
M4X66_RS00895	coaE	199248..199871 (-)	624	WP_249583476.1	dephospho-CoA kinase	-
M4X66_RS00900	pilD	199868..200740 (-)	873	WP_192020739.1	A24 family peptidase	Machinery gene
M4X66_RS00905	pilC	200742..201959 (-)	1218	WP_249583477.1	type II secretion system F family protein	Machinery gene
M4X66_RS00910	pilB	201962..203662 (-)	1701	WP_249583478.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M4X66_RS00915	pilA2	203888..204325 (+)	438	WP_249583479.1	pilin	Machinery gene
M4X66_RS00920	-	205071..205637 (-)	567	WP_249583480.1	recombinase family protein	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 31960.10 Da Isoelectric Point: 7.2387

                                >NTDB_id=688253 M4X66_RS00900 WP_192020739.1 199868..200740(-) (pilD) [Pseudomonas viridiflava strain JACO-C-5]

MPLFDFLASSTLAFVIFVGVLGLLIGSFLNVVVYRLPKMMENDWKAQSREMLGLPAEPEQPTFNLILPHSRCPHCAHQIR

PWENLPVVSYLMLGGKCSQCKAPISKRYPLVELVCALLSAYVAWHFGFGWQTAAMLVLSWGLLAMSLIDADTQLLPDSLV

LPLMWLGLIVNAFGLFTSLSDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG

AILGVIMMRLRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

Download Length: 873 bp

                                >NTDB_id=688253 M4X66_RS00900 WP_192020739.1 199868..200740(-) (pilD) [Pseudomonas viridiflava strain JACO-C-5]

ATGCCCCTCTTCGACTTCCTGGCCAGCTCAACGCTGGCTTTCGTTATTTTCGTTGGCGTACTCGGTCTCCTGATCGGAAG

CTTCCTCAACGTCGTGGTCTACCGCTTACCCAAAATGATGGAGAACGACTGGAAAGCCCAGTCTCGTGAAATGCTCGGCC

TGCCCGCCGAGCCTGAACAGCCCACCTTCAACCTGATCCTCCCCCATTCTCGCTGCCCGCACTGCGCGCATCAGATCCGT

CCCTGGGAGAACCTGCCGGTGGTCAGCTACCTGATGCTTGGCGGCAAGTGTTCGCAATGCAAGGCTCCGATCAGCAAGCG

CTATCCGCTGGTCGAGCTGGTCTGTGCGTTGTTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTGGTTGGCAGACGGCGG

CAATGCTGGTGCTGAGCTGGGGCTTGCTGGCGATGAGCCTTATAGACGCCGACACCCAGCTGCTGCCTGACTCACTGGTA

TTGCCATTGATGTGGCTGGGCCTGATCGTCAACGCGTTTGGTCTGTTCACTTCGTTAAGCGACGCTTTGTGGGGTGCCGT

GGCGGGGTATCTGTCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGAAGGCATGGGCTACGGCGACT

TCAAACTGCTGGCCATGCTCGGGGCGTGGGGCGGCTGGCAGATCCTCCCGCTGACGATCCTGCTGTCATCGCTGGTGGGC

GCCATTCTTGGCGTGATAATGATGCGATTGCGCAATGTCGAATCCGGTACTCCGATCCCCTTCGGTCCTTATCTGGCCAT

CGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	54.945	94.138	0.517
pilD	Vibrio campbellii strain DS40M4	54.579	94.138	0.514
pilD	Acinetobacter baumannii D1279779	52.465	97.931	0.514
pilD	Acinetobacter nosocomialis M2	51.761	97.931	0.507
pilD	Neisseria gonorrhoeae MS11	52.362	87.586	0.459

Detailed information NTG0688253