Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   M2921_RS00015 Genome accession   NZ_CP097010
Coordinates   413..688 (-) Length   91 a.a.
NCBI ID   WP_002366896.1    Uniprot ID   -
Organism   Enterococcus faecalis strain AT48     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..5688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2921_RS00015 (M2921_00015) comGC/cglC 413..688 (-) 276 WP_002366896.1 competence type IV pilus major pilin ComGC Machinery gene
  M2921_RS00020 (M2921_00020) comGB 688..1734 (-) 1047 WP_104869633.1 competence type IV pilus assembly protein ComGB -
  M2921_RS00025 (M2921_00025) comGA 1691..2659 (-) 969 WP_033594522.1 competence type IV pilus ATPase ComGA -
  M2921_RS00030 (M2921_00030) - 2901..4229 (-) 1329 WP_002396609.1 amino acid permease -
  M2921_RS00035 (M2921_00035) rlmN 4520..5593 (-) 1074 WP_033594523.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10492.43 Da        Isoelectric Point: 9.3340

>NTDB_id=686134 M2921_RS00015 WP_002366896.1 413..688(-) (comGC/cglC) [Enterococcus faecalis strain AT48]
MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYTLEKNRTPSLNELVNEGYITK
EQLDKYTAEKQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=686134 M2921_RS00015 WP_002366896.1 413..688(-) (comGC/cglC) [Enterococcus faecalis strain AT48]
ATGAAAAAGAAACAAAAATACGCAGGGTTTACATTATTAGAAATGTTGATTGTCTTATTGATTATTTCCGTATTGATTTT
ACTTTTTGTTCCTAACTTAGCGAAACATAAAGAAACAGTTGATAAAAAAGGCAATGAAGCAATCGTAAAAATTGTAGAAT
CACAAATCGAGCTCTATACACTAGAAAAAAATAGGACGCCTTCCTTAAATGAATTAGTCAACGAAGGCTACATTACTAAA
GAGCAGTTAGATAAATATACAGCAGAAAAGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus pneumoniae Rx1

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae D39

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae R6

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae TIGR4

63.095

92.308

0.582
  comGC/cglC Streptococcus mitis NCTC 12261

61.905

92.308

0.571
  comGC/cglC Streptococcus mitis SK321

61.176

93.407

0.571
  comGC Lactococcus lactis subsp. cremoris KW2

58.14

94.505

0.549
  comYC Streptococcus gordonii str. Challis substr. CH1

56.322

95.604

0.538
  comYC Streptococcus suis isolate S10

52.326

94.505

0.495
  comYC Streptococcus mutans UA159

57.692

85.714

0.495
  comYC Streptococcus mutans UA140

57.692

85.714

0.495
  comGC Latilactobacillus sakei subsp. sakei 23K

46.154

100

0.462
  comGC Staphylococcus aureus MW2

48.101

86.813

0.418
  comGC Staphylococcus aureus N315

48.101

86.813

0.418
  comGC Bacillus subtilis subsp. subtilis str. 168

48.649

81.319

0.396