Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LEUCM_RS05775 Genome accession   NZ_AP017929
Coordinates   1153803..1154693 (+) Length   296 a.a.
NCBI ID   WP_025016380.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148803..1159693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS05745 (LACBS_01129) - 1149238..1150293 (+) 1056 WP_133285956.1 hypothetical protein -
  LEUCM_RS05750 (LACBS_01130) - 1150307..1151707 (+) 1401 WP_025016379.1 hypothetical protein -
  LEUCM_RS05760 (LACBS_01131) - 1151894..1152268 (-) 375 WP_011375004.1 hypothetical protein -
  LEUCM_RS05765 (LACBS_01132) - 1152365..1152865 (+) 501 WP_016265379.1 VanZ family protein -
  LEUCM_RS05770 (LACBS_01133) - 1152956..1153687 (+) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LEUCM_RS05775 (LACBS_01134) comGA 1153803..1154693 (+) 891 WP_025016380.1 competence type IV pilus ATPase ComGA Machinery gene
  LEUCM_RS05780 (LACBS_01135) comGB 1154686..1155693 (+) 1008 WP_056936423.1 type II secretion system F family protein Machinery gene
  LEUCM_RS05785 (LACBS_01136) comGC 1155690..1155989 (+) 300 WP_025016383.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LEUCM_RS05790 (LACBS_01137) comGD 1155961..1156413 (+) 453 WP_025016384.1 competence type IV pilus minor pilin ComGD Machinery gene
  LEUCM_RS05795 (LACBS_01138) comGE 1156400..1156705 (+) 306 WP_025016385.1 hypothetical protein Machinery gene
  LEUCM_RS05800 (LACBS_01139) comGF 1156680..1157192 (+) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  LEUCM_RS05805 (LACBS_01140) - 1157155..1157505 (+) 351 WP_096695394.1 hypothetical protein -
  LEUCM_RS05810 (LACBS_01141) - 1157607..1158626 (+) 1020 WP_241652828.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 32872.67 Da        Isoelectric Point: 6.6910

>NTDB_id=68555 LEUCM_RS05775 WP_025016380.1 1153803..1154693(+) (comGA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MSTEEKLTTLLKHCAKHHVQDLYFTPTIGGWRLTERRQSDLVTNQELDKPTGTRYLNRLKYMAGMDISETRRAQTGRSEL
QLADQTIYLRLATVGDFLNRESLVIRFIYPIGAIYHCDDQQILAQLTQMSRQAGLILFAGPTGSGKTTSLYHLAQQSMSA
KMVVAIEDPIEIVAPEFLQLQVNDNAGLSYAELLKISLRLRPDTLIIGEIRDLETAQYAVSAALSGHLVLSTIHARSTRG
VVARLLDLGISNLQLRACLTGIAYQSLVTKDDIVQAHYELLTGSDYFSAKEGGCDV

Nucleotide


Download         Length: 891 bp        

>NTDB_id=68555 LEUCM_RS05775 WP_025016380.1 1153803..1154693(+) (comGA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTCAACTGAAGAAAAGCTAACAACTTTATTAAAGCATTGTGCTAAGCACCATGTGCAAGATCTTTATTTTACACCGAC
AATAGGTGGCTGGCGCTTGACGGAACGTCGTCAGAGCGATTTGGTCACCAATCAAGAATTGGATAAACCGACTGGAACGC
GTTATTTAAATCGACTGAAGTATATGGCGGGGATGGATATCAGCGAGACTCGGCGTGCGCAAACCGGCCGCTCGGAATTA
CAACTGGCTGACCAAACAATTTATTTACGCCTAGCGACGGTTGGGGATTTTTTAAACCGCGAAAGCTTGGTCATTCGGTT
TATCTATCCAATTGGTGCCATTTATCATTGTGATGATCAACAGATCTTGGCGCAATTAACGCAGATGAGTCGACAGGCGG
GCTTAATTCTTTTCGCTGGGCCGACTGGTTCTGGTAAAACGACTAGTCTCTATCATCTGGCCCAACAATCAATGAGTGCC
AAGATGGTGGTTGCTATTGAAGATCCGATTGAAATTGTTGCACCTGAGTTTTTGCAACTGCAGGTCAACGATAATGCGGG
ATTGAGCTACGCCGAGCTATTAAAAATTAGTTTGCGATTGCGTCCAGATACGCTGATTATCGGTGAGATTCGCGATTTAG
AGACGGCCCAATATGCCGTTTCCGCGGCTTTAAGTGGCCACCTGGTATTGAGCACAATCCATGCTCGAAGTACACGGGGC
GTGGTCGCGCGTTTATTGGATCTTGGTATTTCTAATCTGCAATTACGAGCCTGTCTAACGGGGATTGCCTATCAATCATT
GGTGACAAAAGACGACATTGTGCAAGCCCATTATGAGTTATTAACTGGTTCAGATTATTTCTCGGCAAAAGAAGGTGGAT
GCGATGTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Latilactobacillus sakei subsp. sakei 23K

97.297

100

0.973
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

42.279

91.892

0.389
  comGA/cglA/cilD Streptococcus pneumoniae D39

41.912

91.892

0.385
  comGA/cglA/cilD Streptococcus pneumoniae R6

41.912

91.892

0.385
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

41.912

91.892

0.385
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

41.912

91.892

0.385
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

39.929

95.608

0.382
  comGA Lactococcus lactis subsp. cremoris KW2

37.884

98.986

0.375
  comYA Streptococcus gordonii str. Challis substr. CH1

40.755

89.527

0.365
  comYA Streptococcus mutans UA140

38.909

92.905

0.361
  comYA Streptococcus mutans UA159

38.909

92.905

0.361

Multiple sequence alignment