Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JLZ98_RS24320 Genome accession   NZ_AP022811
Coordinates   4945637..4946113 (-) Length   158 a.a.
NCBI ID   WP_122997650.1    Uniprot ID   -
Organism   Escherichia coli strain JE86-ST02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4940637..4951113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ98_RS28255 - 4942362..4942476 (-) 115 Protein_4777 integrase -
  JLZ98_RS24290 (JE86ST02C_46640) - 4942851..4943693 (-) 843 WP_096855615.1 DUF4942 domain-containing protein -
  JLZ98_RS24295 (JE86ST02C_46650) - 4943778..4943975 (-) 198 WP_001374283.1 DUF957 domain-containing protein -
  JLZ98_RS24300 (JE86ST02C_46660) - 4943987..4944475 (-) 489 WP_000761666.1 DUF5983 family protein -
  JLZ98_RS24305 (JE86ST02C_46670) - 4944472..4944849 (-) 378 WP_001094430.1 TA system toxin CbtA family protein -
  JLZ98_RS24310 (JE86ST02C_46680) - 4944896..4945273 (-) 378 WP_096855618.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JLZ98_RS24315 (JE86ST02C_46690) - 4945347..4945568 (-) 222 WP_096855616.1 DUF987 domain-containing protein -
  JLZ98_RS24320 (JE86ST02C_46700) radC 4945637..4946113 (-) 477 WP_122997650.1 RadC family protein Machinery gene
  JLZ98_RS24325 (JE86ST02C_46710) - 4946128..4946607 (-) 480 WP_032233447.1 antirestriction protein -
  JLZ98_RS24330 - 4946707..4946847 (+) 141 WP_000997937.1 hypothetical protein -
  JLZ98_RS24335 (JE86ST02C_46720) - 4946873..4947691 (-) 819 WP_001175155.1 DUF932 domain-containing protein -
  JLZ98_RS24340 (JE86ST02C_46730) - 4947781..4948014 (-) 234 WP_001278293.1 DUF905 family protein -
  JLZ98_RS24345 (JE86ST02C_46740) - 4948020..4948697 (-) 678 WP_200984377.1 hypothetical protein -
  JLZ98_RS24350 - 4948845..4949525 (-) 681 WP_096855617.1 WYL domain-containing protein -
  JLZ98_RS24355 (JE86ST02C_46750) - 4949728..4950612 (-) 885 WP_001116797.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=68559 JLZ98_RS24320 WP_122997650.1 4945637..4946113(-) (radC) [Escherichia coli strain JE86-ST02]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=68559 JLZ98_RS24320 WP_122997650.1 4945637..4946113(-) (radC) [Escherichia coli strain JE86-ST02]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment